Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5117.1

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5116.1 and Xcc-8004.5117.1 are separated by 9 nucleotidesXcc-8004.5117.1 and Xcc-8004.5118.1 are separated by 143 nucleotidesXcc-8004.5118.1 and Xcc-8004.5119.1 overlap by 8 nucleotides Xcc-8004.5116.1: Xcc-8004.5116.1 - Cardiolipin synthetase (EC 2.7.8.-), at 4,850,903 to 4,852,327 Xcc-8004.5116.1 Xcc-8004.5117.1: Xcc-8004.5117.1 - Transcriptional regulator, LysR family, at 4,852,337 to 4,853,599 Xcc-8004.5117.1 Xcc-8004.5118.1: Xcc-8004.5118.1 - 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.17), at 4,853,743 to 4,854,414 Xcc-8004.5118.1 Xcc-8004.5119.1: Xcc-8004.5119.1 - FldA protein, at 4,854,407 to 4,855,462 Xcc-8004.5119.1 Position (kb) 4852 4853 4854Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4851.337 kb on - strand, within Xcc-8004.5116.1at 4851.337 kb on - strand, within Xcc-8004.5116.1at 4851.459 kb on + strand, within Xcc-8004.5116.1at 4851.459 kb on + strand, within Xcc-8004.5116.1at 4851.459 kb on + strand, within Xcc-8004.5116.1at 4851.460 kb on - strand, within Xcc-8004.5116.1at 4851.557 kb on + strand, within Xcc-8004.5116.1at 4851.557 kb on + strand, within Xcc-8004.5116.1at 4851.885 kb on + strand, within Xcc-8004.5116.1at 4851.885 kb on + strand, within Xcc-8004.5116.1at 4851.885 kb on + strand, within Xcc-8004.5116.1at 4851.885 kb on + strand, within Xcc-8004.5116.1at 4851.885 kb on + strand, within Xcc-8004.5116.1at 4851.886 kb on - strand, within Xcc-8004.5116.1at 4851.886 kb on - strand, within Xcc-8004.5116.1at 4851.886 kb on - strand, within Xcc-8004.5116.1at 4851.888 kb on + strand, within Xcc-8004.5116.1at 4851.888 kb on + strand, within Xcc-8004.5116.1at 4851.888 kb on + strand, within Xcc-8004.5116.1at 4851.888 kb on + strand, within Xcc-8004.5116.1at 4851.888 kb on + strand, within Xcc-8004.5116.1at 4851.889 kb on - strand, within Xcc-8004.5116.1at 4851.889 kb on - strand, within Xcc-8004.5116.1at 4851.889 kb on - strand, within Xcc-8004.5116.1at 4851.889 kb on - strand, within Xcc-8004.5116.1at 4851.889 kb on - strand, within Xcc-8004.5116.1at 4851.889 kb on - strand, within Xcc-8004.5116.1at 4851.889 kb on - strand, within Xcc-8004.5116.1at 4851.954 kb on + strand, within Xcc-8004.5116.1at 4851.954 kb on + strand, within Xcc-8004.5116.1at 4851.955 kb on - strand, within Xcc-8004.5116.1at 4852.124 kb on + strand, within Xcc-8004.5116.1at 4852.124 kb on + strand, within Xcc-8004.5116.1at 4852.124 kb on + strand, within Xcc-8004.5116.1at 4852.125 kb on - strand, within Xcc-8004.5116.1at 4852.125 kb on - strand, within Xcc-8004.5116.1at 4852.125 kb on - strand, within Xcc-8004.5116.1at 4852.125 kb on - strand, within Xcc-8004.5116.1at 4852.164 kb on + strand, within Xcc-8004.5116.1at 4852.164 kb on + strand, within Xcc-8004.5116.1at 4852.164 kb on + strand, within Xcc-8004.5116.1at 4852.164 kb on + strand, within Xcc-8004.5116.1at 4852.165 kb on - strand, within Xcc-8004.5116.1at 4852.165 kb on - strand, within Xcc-8004.5116.1at 4852.165 kb on - strand, within Xcc-8004.5116.1at 4852.165 kb on - strand, within Xcc-8004.5116.1at 4852.165 kb on - strand, within Xcc-8004.5116.1at 4852.371 kb on - strandat 4852.637 kb on + strand, within Xcc-8004.5117.1at 4852.638 kb on - strand, within Xcc-8004.5117.1at 4852.764 kb on + strand, within Xcc-8004.5117.1at 4852.764 kb on + strand, within Xcc-8004.5117.1at 4852.765 kb on - strand, within Xcc-8004.5117.1at 4852.789 kb on - strand, within Xcc-8004.5117.1at 4852.847 kb on + strand, within Xcc-8004.5117.1at 4852.848 kb on - strand, within Xcc-8004.5117.1at 4853.008 kb on + strand, within Xcc-8004.5117.1at 4853.008 kb on + strand, within Xcc-8004.5117.1at 4853.008 kb on + strand, within Xcc-8004.5117.1at 4853.009 kb on - strand, within Xcc-8004.5117.1at 4853.009 kb on - strand, within Xcc-8004.5117.1at 4853.009 kb on - strand, within Xcc-8004.5117.1at 4853.009 kb on - strand, within Xcc-8004.5117.1at 4853.009 kb on - strand, within Xcc-8004.5117.1at 4853.021 kb on + strand, within Xcc-8004.5117.1at 4853.022 kb on - strand, within Xcc-8004.5117.1at 4853.235 kb on + strand, within Xcc-8004.5117.1at 4853.236 kb on - strand, within Xcc-8004.5117.1at 4853.236 kb on - strand, within Xcc-8004.5117.1at 4853.236 kb on - strand, within Xcc-8004.5117.1at 4853.236 kb on - strand, within Xcc-8004.5117.1at 4853.280 kb on + strand, within Xcc-8004.5117.1at 4853.280 kb on + strand, within Xcc-8004.5117.1at 4853.280 kb on + strand, within Xcc-8004.5117.1at 4853.280 kb on + strand, within Xcc-8004.5117.1at 4853.281 kb on - strand, within Xcc-8004.5117.1at 4853.281 kb on - strand, within Xcc-8004.5117.1at 4853.281 kb on - strand, within Xcc-8004.5117.1at 4853.281 kb on - strand, within Xcc-8004.5117.1at 4853.281 kb on - strand, within Xcc-8004.5117.1at 4853.281 kb on - strand, within Xcc-8004.5117.1at 4853.281 kb on - strand, within Xcc-8004.5117.1at 4853.281 kb on - strand, within Xcc-8004.5117.1at 4853.281 kb on - strand, within Xcc-8004.5117.1at 4853.604 kb on + strandat 4853.604 kb on + strandat 4853.604 kb on + strandat 4853.604 kb on + strandat 4853.604 kb on + strandat 4853.604 kb on + strandat 4853.604 kb on + strandat 4853.605 kb on - strandat 4853.605 kb on - strandat 4853.605 kb on - strandat 4853.605 kb on - strandat 4853.647 kb on - strandat 4853.647 kb on - strandat 4853.650 kb on + strandat 4853.650 kb on + strandat 4853.650 kb on + strandat 4853.650 kb on + strandat 4853.651 kb on - strandat 4853.651 kb on - strandat 4853.665 kb on + strandat 4853.666 kb on - strandat 4853.666 kb on - strandat 4853.671 kb on + strandat 4853.672 kb on - strandat 4853.728 kb on - strandat 4853.875 kb on + strand, within Xcc-8004.5118.1at 4853.876 kb on - strand, within Xcc-8004.5118.1at 4853.876 kb on - strand, within Xcc-8004.5118.1at 4853.876 kb on - strand, within Xcc-8004.5118.1at 4853.876 kb on - strand, within Xcc-8004.5118.1at 4854.367 kb on + strandat 4854.367 kb on + strandat 4854.367 kb on + strandat 4854.367 kb on + strandat 4854.367 kb on + strandat 4854.368 kb on - strandat 4854.368 kb on - strandat 4854.368 kb on - strandat 4854.368 kb on - strandat 4854.368 kb on - strandat 4854.368 kb on - strandat 4854.368 kb on - strandat 4854.368 kb on - strandat 4854.368 kb on - strandat 4854.406 kb on + strandat 4854.406 kb on + strandat 4854.407 kb on - strandat 4854.407 kb on - strandat 4854.407 kb on - strandat 4854.407 kb on - strandat 4854.524 kb on + strand, within Xcc-8004.5119.1at 4854.597 kb on + strand, within Xcc-8004.5119.1at 4854.597 kb on + strand, within Xcc-8004.5119.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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4,851,337 - Xcc-8004.5116.1 0.30 +0.0
4,851,337 - Xcc-8004.5116.1 0.30 -0.8
4,851,459 + Xcc-8004.5116.1 0.39 -0.0
4,851,459 + Xcc-8004.5116.1 0.39 -2.1
4,851,459 + Xcc-8004.5116.1 0.39 +0.0
4,851,460 - Xcc-8004.5116.1 0.39 -0.8
4,851,557 + Xcc-8004.5116.1 0.46 +0.1
4,851,557 + Xcc-8004.5116.1 0.46 +0.0
4,851,885 + Xcc-8004.5116.1 0.69 +0.4
4,851,885 + Xcc-8004.5116.1 0.69 +0.6
4,851,885 + Xcc-8004.5116.1 0.69 -0.0
4,851,885 + Xcc-8004.5116.1 0.69 -0.6
4,851,885 + Xcc-8004.5116.1 0.69 +0.0
4,851,886 - Xcc-8004.5116.1 0.69 -1.9
4,851,886 - Xcc-8004.5116.1 0.69 +1.2
4,851,886 - Xcc-8004.5116.1 0.69 -0.7
4,851,888 + Xcc-8004.5116.1 0.69 +0.1
4,851,888 + Xcc-8004.5116.1 0.69 +1.5
4,851,888 + Xcc-8004.5116.1 0.69 +3.2
4,851,888 + Xcc-8004.5116.1 0.69 -1.6
4,851,888 + Xcc-8004.5116.1 0.69 -0.3
4,851,889 - Xcc-8004.5116.1 0.69 +1.0
4,851,889 - Xcc-8004.5116.1 0.69 -1.7
4,851,889 - Xcc-8004.5116.1 0.69 -0.3
4,851,889 - Xcc-8004.5116.1 0.69 -0.8
4,851,889 - Xcc-8004.5116.1 0.69 +2.0
4,851,889 - Xcc-8004.5116.1 0.69 +0.3
4,851,889 - Xcc-8004.5116.1 0.69 -1.0
4,851,954 + Xcc-8004.5116.1 0.74 +0.1
4,851,954 + Xcc-8004.5116.1 0.74 -0.1
4,851,955 - Xcc-8004.5116.1 0.74 -0.2
4,852,124 + Xcc-8004.5116.1 0.86 +1.5
4,852,124 + Xcc-8004.5116.1 0.86 +1.5
4,852,124 + Xcc-8004.5116.1 0.86 +0.3
4,852,125 - Xcc-8004.5116.1 0.86 -0.6
4,852,125 - Xcc-8004.5116.1 0.86 +1.1
4,852,125 - Xcc-8004.5116.1 0.86 -1.3
4,852,125 - Xcc-8004.5116.1 0.86 -0.7
4,852,164 + Xcc-8004.5116.1 0.88 +0.3
4,852,164 + Xcc-8004.5116.1 0.88 -1.9
4,852,164 + Xcc-8004.5116.1 0.88 -0.3
4,852,164 + Xcc-8004.5116.1 0.88 -0.5
4,852,165 - Xcc-8004.5116.1 0.89 -0.2
4,852,165 - Xcc-8004.5116.1 0.89 -0.8
4,852,165 - Xcc-8004.5116.1 0.89 -0.1
4,852,165 - Xcc-8004.5116.1 0.89 +1.0
4,852,165 - Xcc-8004.5116.1 0.89 +0.1
4,852,371 - +0.4
4,852,637 + Xcc-8004.5117.1 0.24 +0.6
4,852,638 - Xcc-8004.5117.1 0.24 +0.2
4,852,764 + Xcc-8004.5117.1 0.34 +0.4
4,852,764 + Xcc-8004.5117.1 0.34 +1.0
4,852,765 - Xcc-8004.5117.1 0.34 -0.3
4,852,789 - Xcc-8004.5117.1 0.36 +2.8
4,852,847 + Xcc-8004.5117.1 0.40 -1.9
4,852,848 - Xcc-8004.5117.1 0.40 +1.0
4,853,008 + Xcc-8004.5117.1 0.53 -0.4
4,853,008 + Xcc-8004.5117.1 0.53 -1.1
4,853,008 + Xcc-8004.5117.1 0.53 -0.4
4,853,009 - Xcc-8004.5117.1 0.53 +0.4
4,853,009 - Xcc-8004.5117.1 0.53 -1.7
4,853,009 - Xcc-8004.5117.1 0.53 -0.4
4,853,009 - Xcc-8004.5117.1 0.53 +2.6
4,853,009 - Xcc-8004.5117.1 0.53 +0.9
4,853,021 + Xcc-8004.5117.1 0.54 -0.4
4,853,022 - Xcc-8004.5117.1 0.54 +1.7
4,853,235 + Xcc-8004.5117.1 0.71 -1.1
4,853,236 - Xcc-8004.5117.1 0.71 +1.0
4,853,236 - Xcc-8004.5117.1 0.71 +0.1
4,853,236 - Xcc-8004.5117.1 0.71 -1.7
4,853,236 - Xcc-8004.5117.1 0.71 +0.5
4,853,280 + Xcc-8004.5117.1 0.75 +0.2
4,853,280 + Xcc-8004.5117.1 0.75 -2.4
4,853,280 + Xcc-8004.5117.1 0.75 -0.9
4,853,280 + Xcc-8004.5117.1 0.75 +1.0
4,853,281 - Xcc-8004.5117.1 0.75 +1.7
4,853,281 - Xcc-8004.5117.1 0.75 -1.9
4,853,281 - Xcc-8004.5117.1 0.75 +0.6
4,853,281 - Xcc-8004.5117.1 0.75 +0.8
4,853,281 - Xcc-8004.5117.1 0.75 +1.6
4,853,281 - Xcc-8004.5117.1 0.75 -2.9
4,853,281 - Xcc-8004.5117.1 0.75 -0.6
4,853,281 - Xcc-8004.5117.1 0.75 -1.0
4,853,281 - Xcc-8004.5117.1 0.75 -0.5
4,853,604 + +2.9
4,853,604 + -0.4
4,853,604 + -1.7
4,853,604 + +4.2
4,853,604 + +1.5
4,853,604 + +0.7
4,853,604 + -0.9
4,853,605 - +0.5
4,853,605 - +1.6
4,853,605 - -3.0
4,853,605 - -0.2
4,853,647 - +1.7
4,853,647 - -0.1
4,853,650 + +2.2
4,853,650 + -3.7
4,853,650 + +1.2
4,853,650 + -0.1
4,853,651 - +0.4
4,853,651 - +0.8
4,853,665 + -1.2
4,853,666 - -0.8
4,853,666 - -1.2
4,853,671 + -1.4
4,853,672 - -1.1
4,853,728 - +0.2
4,853,875 + Xcc-8004.5118.1 0.20 -2.2
4,853,876 - Xcc-8004.5118.1 0.20 +1.4
4,853,876 - Xcc-8004.5118.1 0.20 +0.6
4,853,876 - Xcc-8004.5118.1 0.20 +2.5
4,853,876 - Xcc-8004.5118.1 0.20 +1.2
4,854,367 + +0.4
4,854,367 + -0.7
4,854,367 + -0.2
4,854,367 + -0.0
4,854,367 + +2.0
4,854,368 - +0.9
4,854,368 - +0.2
4,854,368 - -1.9
4,854,368 - +1.1
4,854,368 - +1.0
4,854,368 - -1.1
4,854,368 - +1.2
4,854,368 - +1.8
4,854,368 - -1.4
4,854,406 + -1.6
4,854,406 + -1.2
4,854,407 - +0.1
4,854,407 - +0.1
4,854,407 - +2.3
4,854,407 - +0.1
4,854,524 + Xcc-8004.5119.1 0.11 +0.5
4,854,597 + Xcc-8004.5119.1 0.18 +0.4
4,854,597 + Xcc-8004.5119.1 0.18 -0.5

Or see this region's nucleotide sequence