Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3174.1 and Xcc-8004.3176.1 overlap by 4 nucleotides Xcc-8004.3176.1 and Xcc-8004.3177.1 overlap by 4 nucleotides Xcc-8004.3177.1 and Xcc-8004.3178.1 are separated by 132 nucleotides Xcc-8004.3178.1 and Xcc-8004.3179.1 overlap by 4 nucleotides
Xcc-8004.3174.1: Xcc-8004.3174.1 - Aminotransferase, at 3,094,768 to 3,095,889
Xcc-8004.3174.1
Xcc-8004.3176.1: Xcc-8004.3176.1 - hypothetical protein, at 3,095,886 to 3,096,059
Xcc-8004.3176.1
Xcc-8004.3177.1: Xcc-8004.3177.1 - FIG01210424: hypothetical protein, at 3,096,056 to 3,096,478
Xcc-8004.3177.1
Xcc-8004.3178.1: Xcc-8004.3178.1 - cytochrome like B561, at 3,096,611 to 3,097,402
Xcc-8004.3178.1
Xcc-8004.3179.1: Xcc-8004.3179.1 - Cytochrome C, at 3,097,399 to 3,098,805
Xcc-8004.3179.1
Position (kb) 3096
3097 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 3095.210 kb on + strand, within Xcc-8004.3174.1 at 3095.211 kb on - strand, within Xcc-8004.3174.1 at 3095.228 kb on + strand, within Xcc-8004.3174.1 at 3095.228 kb on + strand, within Xcc-8004.3174.1 at 3095.228 kb on + strand, within Xcc-8004.3174.1 at 3095.229 kb on - strand, within Xcc-8004.3174.1 at 3095.420 kb on + strand, within Xcc-8004.3174.1 at 3095.616 kb on + strand, within Xcc-8004.3174.1 at 3095.786 kb on + strand at 3095.787 kb on - strand at 3095.987 kb on + strand, within Xcc-8004.3176.1 at 3096.105 kb on + strand, within Xcc-8004.3177.1 at 3096.117 kb on + strand, within Xcc-8004.3177.1 at 3096.118 kb on - strand, within Xcc-8004.3177.1 at 3096.118 kb on - strand, within Xcc-8004.3177.1 at 3096.132 kb on + strand, within Xcc-8004.3177.1 at 3096.133 kb on - strand, within Xcc-8004.3177.1 at 3096.133 kb on - strand, within Xcc-8004.3177.1 at 3096.136 kb on - strand, within Xcc-8004.3177.1 at 3096.136 kb on - strand, within Xcc-8004.3177.1 at 3096.136 kb on - strand, within Xcc-8004.3177.1 at 3096.212 kb on + strand, within Xcc-8004.3177.1 at 3096.212 kb on + strand, within Xcc-8004.3177.1 at 3096.212 kb on + strand, within Xcc-8004.3177.1 at 3096.372 kb on + strand, within Xcc-8004.3177.1 at 3096.372 kb on + strand, within Xcc-8004.3177.1 at 3096.373 kb on - strand, within Xcc-8004.3177.1 at 3096.373 kb on - strand, within Xcc-8004.3177.1 at 3096.373 kb on - strand, within Xcc-8004.3177.1 at 3096.375 kb on + strand, within Xcc-8004.3177.1 at 3096.375 kb on + strand, within Xcc-8004.3177.1 at 3096.376 kb on - strand, within Xcc-8004.3177.1 at 3096.451 kb on + strand at 3096.451 kb on + strand at 3096.451 kb on + strand at 3096.508 kb on + strand at 3096.508 kb on + strand at 3096.508 kb on + strand at 3096.675 kb on - strand at 3097.041 kb on + strand, within Xcc-8004.3178.1 at 3097.139 kb on + strand, within Xcc-8004.3178.1 at 3097.140 kb on - strand, within Xcc-8004.3178.1 at 3097.140 kb on - strand, within Xcc-8004.3178.1 at 3097.140 kb on - strand, within Xcc-8004.3178.1 at 3097.205 kb on + strand, within Xcc-8004.3178.1 at 3097.309 kb on - strand, within Xcc-8004.3178.1 at 3097.309 kb on - strand, within Xcc-8004.3178.1 at 3097.321 kb on + strand, within Xcc-8004.3178.1 at 3097.322 kb on - strand, within Xcc-8004.3178.1 at 3097.322 kb on - strand, within Xcc-8004.3178.1 at 3097.322 kb on - strand, within Xcc-8004.3178.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 3,095,210 + Xcc-8004.3174.1 0.39 -0.2 3,095,211 - Xcc-8004.3174.1 0.39 +0.1 3,095,228 + Xcc-8004.3174.1 0.41 +0.1 3,095,228 + Xcc-8004.3174.1 0.41 -0.7 3,095,228 + Xcc-8004.3174.1 0.41 +0.4 3,095,229 - Xcc-8004.3174.1 0.41 +1.3 3,095,420 + Xcc-8004.3174.1 0.58 -2.8 3,095,616 + Xcc-8004.3174.1 0.76 -1.9 3,095,786 + -3.2 3,095,787 - +2.1 3,095,987 + Xcc-8004.3176.1 0.58 -1.2 3,096,105 + Xcc-8004.3177.1 0.12 -2.1 3,096,117 + Xcc-8004.3177.1 0.14 -1.6 3,096,118 - Xcc-8004.3177.1 0.15 +1.6 3,096,118 - Xcc-8004.3177.1 0.15 -0.8 3,096,132 + Xcc-8004.3177.1 0.18 -0.8 3,096,133 - Xcc-8004.3177.1 0.18 +0.7 3,096,133 - Xcc-8004.3177.1 0.18 -0.7 3,096,136 - Xcc-8004.3177.1 0.19 +1.8 3,096,136 - Xcc-8004.3177.1 0.19 +0.5 3,096,136 - Xcc-8004.3177.1 0.19 +0.0 3,096,212 + Xcc-8004.3177.1 0.37 +1.2 3,096,212 + Xcc-8004.3177.1 0.37 +1.4 3,096,212 + Xcc-8004.3177.1 0.37 +0.5 3,096,372 + Xcc-8004.3177.1 0.75 -0.3 3,096,372 + Xcc-8004.3177.1 0.75 -2.8 3,096,373 - Xcc-8004.3177.1 0.75 +0.3 3,096,373 - Xcc-8004.3177.1 0.75 +4.5 3,096,373 - Xcc-8004.3177.1 0.75 -1.5 3,096,375 + Xcc-8004.3177.1 0.75 -2.7 3,096,375 + Xcc-8004.3177.1 0.75 +1.2 3,096,376 - Xcc-8004.3177.1 0.76 +0.4 3,096,451 + +0.2 3,096,451 + +1.1 3,096,451 + -0.3 3,096,508 + +0.3 3,096,508 + -0.2 3,096,508 + -1.1 3,096,675 - -1.1 3,097,041 + Xcc-8004.3178.1 0.54 +0.1 3,097,139 + Xcc-8004.3178.1 0.67 -1.1 3,097,140 - Xcc-8004.3178.1 0.67 -0.4 3,097,140 - Xcc-8004.3178.1 0.67 +0.2 3,097,140 - Xcc-8004.3178.1 0.67 +0.1 3,097,205 + Xcc-8004.3178.1 0.75 -2.2 3,097,309 - Xcc-8004.3178.1 0.88 -1.5 3,097,309 - Xcc-8004.3178.1 0.88 -1.8 3,097,321 + Xcc-8004.3178.1 0.90 +0.0 3,097,322 - Xcc-8004.3178.1 0.90 +0.9 3,097,322 - Xcc-8004.3178.1 0.90 +1.5 3,097,322 - Xcc-8004.3178.1 0.90 -1.2
Or see this region's nucleotide sequence