Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3161.1

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3160.1 and Xcc-8004.3161.1 are separated by 79 nucleotidesXcc-8004.3161.1 and Xcc-8004.3162.1 are separated by 39 nucleotides Xcc-8004.3160.1: Xcc-8004.3160.1 - MFS transporter, at 3,077,951 to 3,079,357 Xcc-8004.3160.1 Xcc-8004.3161.1: Xcc-8004.3161.1 - ABC transporter ATP-binding protein, at 3,079,437 to 3,081,137 Xcc-8004.3161.1 Xcc-8004.3162.1: Xcc-8004.3162.1 - FIG01211092: hypothetical protein, at 3,081,177 to 3,082,265 Xcc-8004.3162.1 Position (kb) 3079 3080 3081 3082Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3078.556 kb on - strand, within Xcc-8004.3160.1at 3078.908 kb on + strand, within Xcc-8004.3160.1at 3078.908 kb on + strand, within Xcc-8004.3160.1at 3078.908 kb on + strand, within Xcc-8004.3160.1at 3078.908 kb on + strand, within Xcc-8004.3160.1at 3079.021 kb on - strand, within Xcc-8004.3160.1at 3079.021 kb on - strand, within Xcc-8004.3160.1at 3079.198 kb on + strand, within Xcc-8004.3160.1at 3079.365 kb on + strandat 3079.365 kb on + strandat 3079.365 kb on + strandat 3079.365 kb on + strandat 3079.366 kb on - strandat 3079.375 kb on + strandat 3079.461 kb on - strandat 3079.864 kb on + strand, within Xcc-8004.3161.1at 3079.864 kb on + strand, within Xcc-8004.3161.1at 3079.864 kb on + strand, within Xcc-8004.3161.1at 3079.864 kb on + strand, within Xcc-8004.3161.1at 3079.864 kb on + strand, within Xcc-8004.3161.1at 3079.864 kb on + strand, within Xcc-8004.3161.1at 3079.865 kb on - strand, within Xcc-8004.3161.1at 3079.865 kb on - strand, within Xcc-8004.3161.1at 3080.158 kb on + strand, within Xcc-8004.3161.1at 3080.230 kb on + strand, within Xcc-8004.3161.1at 3080.230 kb on + strand, within Xcc-8004.3161.1at 3080.230 kb on + strand, within Xcc-8004.3161.1at 3080.389 kb on + strand, within Xcc-8004.3161.1at 3080.389 kb on + strand, within Xcc-8004.3161.1at 3080.390 kb on - strand, within Xcc-8004.3161.1at 3080.422 kb on + strand, within Xcc-8004.3161.1at 3080.422 kb on + strand, within Xcc-8004.3161.1at 3080.423 kb on - strand, within Xcc-8004.3161.1at 3080.525 kb on - strand, within Xcc-8004.3161.1at 3080.525 kb on - strand, within Xcc-8004.3161.1at 3080.722 kb on + strand, within Xcc-8004.3161.1at 3080.722 kb on + strand, within Xcc-8004.3161.1at 3080.722 kb on + strand, within Xcc-8004.3161.1at 3080.722 kb on + strand, within Xcc-8004.3161.1at 3080.723 kb on - strand, within Xcc-8004.3161.1at 3080.723 kb on - strand, within Xcc-8004.3161.1at 3080.723 kb on - strand, within Xcc-8004.3161.1at 3080.723 kb on - strand, within Xcc-8004.3161.1at 3080.825 kb on - strand, within Xcc-8004.3161.1at 3080.825 kb on - strand, within Xcc-8004.3161.1at 3080.941 kb on - strand, within Xcc-8004.3161.1at 3081.043 kb on + strandat 3081.044 kb on - strandat 3081.268 kb on + strandat 3081.270 kb on + strandat 3081.271 kb on - strandat 3081.271 kb on - strandat 3081.328 kb on + strand, within Xcc-8004.3162.1at 3081.329 kb on - strand, within Xcc-8004.3162.1at 3081.835 kb on + strand, within Xcc-8004.3162.1at 3081.836 kb on - strand, within Xcc-8004.3162.1at 3081.904 kb on + strand, within Xcc-8004.3162.1at 3081.904 kb on + strand, within Xcc-8004.3162.1at 3081.904 kb on + strand, within Xcc-8004.3162.1at 3082.017 kb on - strand, within Xcc-8004.3162.1at 3082.064 kb on - strand, within Xcc-8004.3162.1at 3082.128 kb on + strand, within Xcc-8004.3162.1at 3082.128 kb on + strand, within Xcc-8004.3162.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,078,556 - Xcc-8004.3160.1 0.43 +1.8
3,078,908 + Xcc-8004.3160.1 0.68 +1.1
3,078,908 + Xcc-8004.3160.1 0.68 -0.1
3,078,908 + Xcc-8004.3160.1 0.68 +0.5
3,078,908 + Xcc-8004.3160.1 0.68 -0.7
3,079,021 - Xcc-8004.3160.1 0.76 +1.4
3,079,021 - Xcc-8004.3160.1 0.76 -0.6
3,079,198 + Xcc-8004.3160.1 0.89 -1.0
3,079,365 + -0.7
3,079,365 + +1.1
3,079,365 + +0.2
3,079,365 + +1.2
3,079,366 - +0.7
3,079,375 + +0.8
3,079,461 - -1.1
3,079,864 + Xcc-8004.3161.1 0.25 -3.4
3,079,864 + Xcc-8004.3161.1 0.25 +1.2
3,079,864 + Xcc-8004.3161.1 0.25 +0.7
3,079,864 + Xcc-8004.3161.1 0.25 +0.6
3,079,864 + Xcc-8004.3161.1 0.25 -0.9
3,079,864 + Xcc-8004.3161.1 0.25 -2.2
3,079,865 - Xcc-8004.3161.1 0.25 -1.8
3,079,865 - Xcc-8004.3161.1 0.25 -0.2
3,080,158 + Xcc-8004.3161.1 0.42 -0.1
3,080,230 + Xcc-8004.3161.1 0.47 +2.5
3,080,230 + Xcc-8004.3161.1 0.47 +0.4
3,080,230 + Xcc-8004.3161.1 0.47 -0.8
3,080,389 + Xcc-8004.3161.1 0.56 +0.2
3,080,389 + Xcc-8004.3161.1 0.56 -1.9
3,080,390 - Xcc-8004.3161.1 0.56 +0.7
3,080,422 + Xcc-8004.3161.1 0.58 -0.6
3,080,422 + Xcc-8004.3161.1 0.58 -0.1
3,080,423 - Xcc-8004.3161.1 0.58 -3.5
3,080,525 - Xcc-8004.3161.1 0.64 -2.2
3,080,525 - Xcc-8004.3161.1 0.64 -0.1
3,080,722 + Xcc-8004.3161.1 0.76 +1.0
3,080,722 + Xcc-8004.3161.1 0.76 -0.2
3,080,722 + Xcc-8004.3161.1 0.76 -1.5
3,080,722 + Xcc-8004.3161.1 0.76 -0.3
3,080,723 - Xcc-8004.3161.1 0.76 +0.8
3,080,723 - Xcc-8004.3161.1 0.76 +0.5
3,080,723 - Xcc-8004.3161.1 0.76 +0.8
3,080,723 - Xcc-8004.3161.1 0.76 -1.9
3,080,825 - Xcc-8004.3161.1 0.82 -1.7
3,080,825 - Xcc-8004.3161.1 0.82 -1.3
3,080,941 - Xcc-8004.3161.1 0.88 -2.5
3,081,043 + -1.5
3,081,044 - -0.0
3,081,268 + +0.3
3,081,270 + -2.2
3,081,271 - -2.6
3,081,271 - -0.7
3,081,328 + Xcc-8004.3162.1 0.14 -0.5
3,081,329 - Xcc-8004.3162.1 0.14 +1.8
3,081,835 + Xcc-8004.3162.1 0.60 +0.2
3,081,836 - Xcc-8004.3162.1 0.61 +0.8
3,081,904 + Xcc-8004.3162.1 0.67 +0.1
3,081,904 + Xcc-8004.3162.1 0.67 +0.4
3,081,904 + Xcc-8004.3162.1 0.67 +0.2
3,082,017 - Xcc-8004.3162.1 0.77 +0.4
3,082,064 - Xcc-8004.3162.1 0.81 +0.2
3,082,128 + Xcc-8004.3162.1 0.87 +0.1
3,082,128 + Xcc-8004.3162.1 0.87 +2.7

Or see this region's nucleotide sequence