Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1908.1

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1906.1 and Xcc-8004.1908.1 overlap by 4 nucleotidesXcc-8004.1908.1 and Xcc-8004.1909.1 are separated by 10 nucleotidesXcc-8004.1909.1 and Xcc-8004.1910.1 are separated by 37 nucleotides Xcc-8004.1906.1: Xcc-8004.1906.1 - lipoprotein, at 1,839,433 to 1,840,470 Xcc-8004.1906.1 Xcc-8004.1908.1: Xcc-8004.1908.1 - FIG01211507: hypothetical protein, at 1,840,467 to 1,841,369 Xcc-8004.1908.1 Xcc-8004.1909.1: Xcc-8004.1909.1 - FIG01212339: hypothetical protein, at 1,841,380 to 1,841,964 Xcc-8004.1909.1 Xcc-8004.1910.1: Xcc-8004.1910.1 - hypothetical protein, at 1,842,002 to 1,842,571 Xcc-8004.1910.1 Position (kb) 1840 1841 1842Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1839.537 kb on + strand, within Xcc-8004.1906.1at 1839.537 kb on + strand, within Xcc-8004.1906.1at 1839.538 kb on - strand, within Xcc-8004.1906.1at 1839.872 kb on + strand, within Xcc-8004.1906.1at 1840.152 kb on - strand, within Xcc-8004.1906.1at 1840.173 kb on - strand, within Xcc-8004.1906.1at 1840.300 kb on + strand, within Xcc-8004.1906.1at 1840.393 kb on - strandat 1840.393 kb on - strandat 1840.422 kb on + strandat 1840.423 kb on - strandat 1840.534 kb on + strandat 1840.535 kb on - strandat 1840.535 kb on - strandat 1840.573 kb on + strand, within Xcc-8004.1908.1at 1840.574 kb on - strand, within Xcc-8004.1908.1at 1840.880 kb on - strand, within Xcc-8004.1908.1at 1840.972 kb on + strand, within Xcc-8004.1908.1at 1840.976 kb on + strand, within Xcc-8004.1908.1at 1841.026 kb on + strand, within Xcc-8004.1908.1at 1841.026 kb on + strand, within Xcc-8004.1908.1at 1841.027 kb on - strand, within Xcc-8004.1908.1at 1841.027 kb on - strand, within Xcc-8004.1908.1at 1841.158 kb on + strand, within Xcc-8004.1908.1at 1841.158 kb on + strand, within Xcc-8004.1908.1at 1841.158 kb on + strand, within Xcc-8004.1908.1at 1841.158 kb on + strand, within Xcc-8004.1908.1at 1841.158 kb on + strand, within Xcc-8004.1908.1at 1841.159 kb on - strand, within Xcc-8004.1908.1at 1841.159 kb on - strand, within Xcc-8004.1908.1at 1841.159 kb on - strand, within Xcc-8004.1908.1at 1841.159 kb on - strand, within Xcc-8004.1908.1at 1841.166 kb on - strand, within Xcc-8004.1908.1at 1841.284 kb on + strandat 1841.284 kb on + strandat 1841.284 kb on + strandat 1841.285 kb on - strandat 1841.285 kb on - strandat 1841.289 kb on + strandat 1841.289 kb on + strandat 1841.426 kb on + strandat 1841.447 kb on + strand, within Xcc-8004.1909.1at 1841.588 kb on + strand, within Xcc-8004.1909.1at 1841.727 kb on + strand, within Xcc-8004.1909.1at 1841.728 kb on - strand, within Xcc-8004.1909.1at 1841.728 kb on - strand, within Xcc-8004.1909.1at 1841.870 kb on + strand, within Xcc-8004.1909.1at 1841.870 kb on + strand, within Xcc-8004.1909.1at 1841.871 kb on - strand, within Xcc-8004.1909.1at 1841.871 kb on - strand, within Xcc-8004.1909.1at 1841.947 kb on + strandat 1841.948 kb on - strandat 1842.008 kb on + strandat 1842.008 kb on + strandat 1842.008 kb on + strandat 1842.009 kb on - strandat 1842.035 kb on + strandat 1842.036 kb on - strandat 1842.064 kb on + strand, within Xcc-8004.1910.1at 1842.064 kb on + strand, within Xcc-8004.1910.1at 1842.065 kb on - strand, within Xcc-8004.1910.1at 1842.132 kb on + strand, within Xcc-8004.1910.1at 1842.132 kb on + strand, within Xcc-8004.1910.1at 1842.133 kb on - strand, within Xcc-8004.1910.1at 1842.166 kb on + strand, within Xcc-8004.1910.1at 1842.166 kb on + strand, within Xcc-8004.1910.1at 1842.166 kb on + strand, within Xcc-8004.1910.1at 1842.247 kb on + strand, within Xcc-8004.1910.1at 1842.247 kb on + strand, within Xcc-8004.1910.1at 1842.247 kb on + strand, within Xcc-8004.1910.1at 1842.248 kb on - strand, within Xcc-8004.1910.1at 1842.248 kb on - strand, within Xcc-8004.1910.1at 1842.248 kb on - strand, within Xcc-8004.1910.1at 1842.248 kb on - strand, within Xcc-8004.1910.1at 1842.263 kb on + strand, within Xcc-8004.1910.1at 1842.263 kb on + strand, within Xcc-8004.1910.1at 1842.263 kb on + strand, within Xcc-8004.1910.1at 1842.264 kb on - strand, within Xcc-8004.1910.1at 1842.290 kb on + strand, within Xcc-8004.1910.1at 1842.290 kb on + strand, within Xcc-8004.1910.1at 1842.290 kb on + strand, within Xcc-8004.1910.1at 1842.290 kb on + strand, within Xcc-8004.1910.1at 1842.290 kb on + strand, within Xcc-8004.1910.1at 1842.291 kb on - strand, within Xcc-8004.1910.1at 1842.291 kb on - strand, within Xcc-8004.1910.1at 1842.291 kb on - strand, within Xcc-8004.1910.1at 1842.291 kb on - strand, within Xcc-8004.1910.1at 1842.291 kb on - strand, within Xcc-8004.1910.1at 1842.291 kb on - strand, within Xcc-8004.1910.1at 1842.291 kb on - strand, within Xcc-8004.1910.1at 1842.291 kb on - strand, within Xcc-8004.1910.1at 1842.291 kb on - strand, within Xcc-8004.1910.1at 1842.291 kb on - strand, within Xcc-8004.1910.1at 1842.291 kb on - strand, within Xcc-8004.1910.1at 1842.291 kb on - strand, within Xcc-8004.1910.1at 1842.347 kb on - strand, within Xcc-8004.1910.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,839,537 + Xcc-8004.1906.1 0.10 -2.3
1,839,537 + Xcc-8004.1906.1 0.10 -0.1
1,839,538 - Xcc-8004.1906.1 0.10 +0.3
1,839,872 + Xcc-8004.1906.1 0.42 -0.4
1,840,152 - Xcc-8004.1906.1 0.69 -0.1
1,840,173 - Xcc-8004.1906.1 0.71 -0.3
1,840,300 + Xcc-8004.1906.1 0.84 -2.6
1,840,393 - +1.3
1,840,393 - -1.9
1,840,422 + +2.7
1,840,423 - +0.1
1,840,534 + +0.6
1,840,535 - -0.9
1,840,535 - +1.2
1,840,573 + Xcc-8004.1908.1 0.12 -0.2
1,840,574 - Xcc-8004.1908.1 0.12 +0.3
1,840,880 - Xcc-8004.1908.1 0.46 +0.1
1,840,972 + Xcc-8004.1908.1 0.56 -0.0
1,840,976 + Xcc-8004.1908.1 0.56 -0.2
1,841,026 + Xcc-8004.1908.1 0.62 +0.2
1,841,026 + Xcc-8004.1908.1 0.62 -0.3
1,841,027 - Xcc-8004.1908.1 0.62 -0.2
1,841,027 - Xcc-8004.1908.1 0.62 +1.1
1,841,158 + Xcc-8004.1908.1 0.77 +0.0
1,841,158 + Xcc-8004.1908.1 0.77 -1.0
1,841,158 + Xcc-8004.1908.1 0.77 -2.6
1,841,158 + Xcc-8004.1908.1 0.77 +1.6
1,841,158 + Xcc-8004.1908.1 0.77 -1.1
1,841,159 - Xcc-8004.1908.1 0.77 +2.5
1,841,159 - Xcc-8004.1908.1 0.77 -0.2
1,841,159 - Xcc-8004.1908.1 0.77 +1.6
1,841,159 - Xcc-8004.1908.1 0.77 -1.1
1,841,166 - Xcc-8004.1908.1 0.77 -1.5
1,841,284 + -0.5
1,841,284 + -0.0
1,841,284 + -0.5
1,841,285 - -1.2
1,841,285 - +0.9
1,841,289 + -2.2
1,841,289 + -0.5
1,841,426 + +2.2
1,841,447 + Xcc-8004.1909.1 0.11 -1.3
1,841,588 + Xcc-8004.1909.1 0.36 +0.5
1,841,727 + Xcc-8004.1909.1 0.59 +1.3
1,841,728 - Xcc-8004.1909.1 0.59 -0.4
1,841,728 - Xcc-8004.1909.1 0.59 +0.1
1,841,870 + Xcc-8004.1909.1 0.84 -0.3
1,841,870 + Xcc-8004.1909.1 0.84 -0.7
1,841,871 - Xcc-8004.1909.1 0.84 +0.7
1,841,871 - Xcc-8004.1909.1 0.84 -0.4
1,841,947 + +0.6
1,841,948 - +0.1
1,842,008 + -2.4
1,842,008 + +0.3
1,842,008 + -0.3
1,842,009 - +0.1
1,842,035 + +1.9
1,842,036 - -0.7
1,842,064 + Xcc-8004.1910.1 0.11 +0.3
1,842,064 + Xcc-8004.1910.1 0.11 -2.0
1,842,065 - Xcc-8004.1910.1 0.11 +0.1
1,842,132 + Xcc-8004.1910.1 0.23 -0.5
1,842,132 + Xcc-8004.1910.1 0.23 -1.0
1,842,133 - Xcc-8004.1910.1 0.23 -1.4
1,842,166 + Xcc-8004.1910.1 0.29 +0.6
1,842,166 + Xcc-8004.1910.1 0.29 +0.1
1,842,166 + Xcc-8004.1910.1 0.29 -2.4
1,842,247 + Xcc-8004.1910.1 0.43 -0.3
1,842,247 + Xcc-8004.1910.1 0.43 -0.6
1,842,247 + Xcc-8004.1910.1 0.43 -1.5
1,842,248 - Xcc-8004.1910.1 0.43 +3.1
1,842,248 - Xcc-8004.1910.1 0.43 -1.3
1,842,248 - Xcc-8004.1910.1 0.43 +0.6
1,842,248 - Xcc-8004.1910.1 0.43 +0.9
1,842,263 + Xcc-8004.1910.1 0.46 +0.8
1,842,263 + Xcc-8004.1910.1 0.46 -0.5
1,842,263 + Xcc-8004.1910.1 0.46 -0.3
1,842,264 - Xcc-8004.1910.1 0.46 -0.3
1,842,290 + Xcc-8004.1910.1 0.51 -0.6
1,842,290 + Xcc-8004.1910.1 0.51 +0.1
1,842,290 + Xcc-8004.1910.1 0.51 -0.1
1,842,290 + Xcc-8004.1910.1 0.51 -2.4
1,842,290 + Xcc-8004.1910.1 0.51 -0.3
1,842,291 - Xcc-8004.1910.1 0.51 -0.9
1,842,291 - Xcc-8004.1910.1 0.51 -0.0
1,842,291 - Xcc-8004.1910.1 0.51 -0.2
1,842,291 - Xcc-8004.1910.1 0.51 +0.4
1,842,291 - Xcc-8004.1910.1 0.51 +2.0
1,842,291 - Xcc-8004.1910.1 0.51 +0.0
1,842,291 - Xcc-8004.1910.1 0.51 +1.1
1,842,291 - Xcc-8004.1910.1 0.51 +4.9
1,842,291 - Xcc-8004.1910.1 0.51 -1.6
1,842,291 - Xcc-8004.1910.1 0.51 -0.4
1,842,291 - Xcc-8004.1910.1 0.51 -1.2
1,842,291 - Xcc-8004.1910.1 0.51 +0.1
1,842,347 - Xcc-8004.1910.1 0.61 -0.5

Or see this region's nucleotide sequence