Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1509.1 and Xcc-8004.1510.1 overlap by 4 nucleotides Xcc-8004.1510.1 and Xcc-8004.1511.1 are separated by 243 nucleotides Xcc-8004.1511.1 and Xcc-8004.1512.1 overlap by 4 nucleotides Xcc-8004.1512.1 and Xcc-8004.1513.1 are separated by 129 nucleotides
Xcc-8004.1509.1: Xcc-8004.1509.1 - hypothetical protein, at 1,446,771 to 1,446,920
Xcc-8004.1509.1
Xcc-8004.1510.1: Xcc-8004.1510.1 - Ribosomal-protein-S5p-alanine acetyltransferase, at 1,446,917 to 1,447,489
Xcc-8004.1510.1
Xcc-8004.1511.1: Xcc-8004.1511.1 - Ribonuclease E (EC 3.1.26.12), at 1,447,733 to 1,449,619
Xcc-8004.1511.1
Xcc-8004.1512.1: Xcc-8004.1512.1 - RNA polymerase sigma-70 factor, at 1,449,616 to 1,450,146
Xcc-8004.1512.1
Xcc-8004.1513.1: Xcc-8004.1513.1 - Von Willebrand factor type A domain protein, at 1,450,276 to 1,452,069
Xcc-8004.1513.1
Position (kb) 1447
1448
1449
1450 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1447.008 kb on - strand, within Xcc-8004.1510.1 at 1447.067 kb on + strand, within Xcc-8004.1510.1 at 1447.067 kb on + strand, within Xcc-8004.1510.1 at 1447.297 kb on - strand, within Xcc-8004.1510.1 at 1447.297 kb on - strand, within Xcc-8004.1510.1 at 1447.334 kb on + strand, within Xcc-8004.1510.1 at 1447.334 kb on + strand, within Xcc-8004.1510.1 at 1447.335 kb on - strand, within Xcc-8004.1510.1 at 1447.409 kb on + strand, within Xcc-8004.1510.1 at 1447.559 kb on + strand at 1447.559 kb on + strand at 1447.559 kb on + strand at 1447.559 kb on + strand at 1447.559 kb on + strand at 1447.560 kb on - strand at 1447.561 kb on + strand at 1447.608 kb on + strand at 1447.609 kb on - strand at 1447.609 kb on - strand at 1447.868 kb on + strand at 1447.868 kb on + strand at 1447.951 kb on + strand, within Xcc-8004.1511.1 at 1448.204 kb on + strand, within Xcc-8004.1511.1 at 1448.535 kb on + strand, within Xcc-8004.1511.1 at 1448.535 kb on + strand, within Xcc-8004.1511.1 at 1448.705 kb on + strand, within Xcc-8004.1511.1 at 1449.659 kb on + strand at 1450.039 kb on + strand, within Xcc-8004.1512.1 at 1450.039 kb on + strand, within Xcc-8004.1512.1 at 1450.039 kb on + strand, within Xcc-8004.1512.1 at 1450.040 kb on - strand, within Xcc-8004.1512.1 at 1450.040 kb on - strand, within Xcc-8004.1512.1 at 1450.199 kb on + strand at 1450.200 kb on - strand at 1450.566 kb on - strand, within Xcc-8004.1513.1 at 1450.602 kb on + strand, within Xcc-8004.1513.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 1,447,008 - Xcc-8004.1510.1 0.16 -2.1 1,447,067 + Xcc-8004.1510.1 0.26 +0.3 1,447,067 + Xcc-8004.1510.1 0.26 +0.0 1,447,297 - Xcc-8004.1510.1 0.66 -0.8 1,447,297 - Xcc-8004.1510.1 0.66 -1.0 1,447,334 + Xcc-8004.1510.1 0.73 -0.8 1,447,334 + Xcc-8004.1510.1 0.73 -0.5 1,447,335 - Xcc-8004.1510.1 0.73 +0.8 1,447,409 + Xcc-8004.1510.1 0.86 -0.3 1,447,559 + -1.3 1,447,559 + -1.1 1,447,559 + -0.0 1,447,559 + +0.1 1,447,559 + +0.6 1,447,560 - -0.2 1,447,561 + -0.3 1,447,608 + -2.7 1,447,609 - -0.1 1,447,609 - -0.1 1,447,868 + -1.9 1,447,868 + +2.4 1,447,951 + Xcc-8004.1511.1 0.12 +0.8 1,448,204 + Xcc-8004.1511.1 0.25 -0.6 1,448,535 + Xcc-8004.1511.1 0.43 -0.6 1,448,535 + Xcc-8004.1511.1 0.43 +1.3 1,448,705 + Xcc-8004.1511.1 0.52 -2.9 1,449,659 + +0.0 1,450,039 + Xcc-8004.1512.1 0.80 -0.9 1,450,039 + Xcc-8004.1512.1 0.80 -1.0 1,450,039 + Xcc-8004.1512.1 0.80 -3.4 1,450,040 - Xcc-8004.1512.1 0.80 +4.2 1,450,040 - Xcc-8004.1512.1 0.80 +1.0 1,450,199 + -0.6 1,450,200 - -0.4 1,450,566 - Xcc-8004.1513.1 0.16 -0.4 1,450,602 + Xcc-8004.1513.1 0.18 -2.7
Or see this region's nucleotide sequence