Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1499.1

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.1498.1 and Xcc-8004.1499.1 overlap by 1 nucleotidesXcc-8004.1499.1 and Xcc-8004.1500.1 are separated by 204 nucleotides Xcc-8004.1498.1: Xcc-8004.1498.1 - TsaB protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA, at 1,430,515 to 1,431,234 Xcc-8004.1498.1 Xcc-8004.1499.1: Xcc-8004.1499.1 - ADP-ribosylglycohydrolase family protein, at 1,431,234 to 1,432,157 Xcc-8004.1499.1 Xcc-8004.1500.1: Xcc-8004.1500.1 - Ferric siderophore transport system, periplasmic binding protein TonB, at 1,432,362 to 1,433,237 Xcc-8004.1500.1 Position (kb) 1431 1432 1433Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1430.241 kb on + strandat 1430.241 kb on + strandat 1430.308 kb on + strandat 1430.318 kb on + strandat 1430.318 kb on + strandat 1430.318 kb on + strandat 1430.375 kb on + strandat 1430.375 kb on + strandat 1430.375 kb on + strandat 1430.375 kb on + strandat 1430.376 kb on - strandat 1430.376 kb on - strandat 1430.376 kb on - strandat 1430.459 kb on - strandat 1431.239 kb on + strandat 1431.239 kb on + strandat 1431.240 kb on - strandat 1431.250 kb on + strandat 1431.441 kb on + strand, within Xcc-8004.1499.1at 1431.441 kb on + strand, within Xcc-8004.1499.1at 1431.480 kb on + strand, within Xcc-8004.1499.1at 1431.493 kb on - strand, within Xcc-8004.1499.1at 1431.493 kb on - strand, within Xcc-8004.1499.1at 1431.504 kb on + strand, within Xcc-8004.1499.1at 1431.504 kb on + strand, within Xcc-8004.1499.1at 1431.505 kb on - strand, within Xcc-8004.1499.1at 1431.568 kb on - strand, within Xcc-8004.1499.1at 1431.913 kb on - strand, within Xcc-8004.1499.1at 1432.053 kb on + strand, within Xcc-8004.1499.1at 1432.053 kb on + strand, within Xcc-8004.1499.1at 1432.053 kb on + strand, within Xcc-8004.1499.1at 1432.053 kb on + strand, within Xcc-8004.1499.1at 1432.134 kb on + strandat 1432.220 kb on + strandat 1432.220 kb on + strandat 1432.220 kb on + strandat 1432.220 kb on + strandat 1432.221 kb on - strandat 1432.221 kb on - strandat 1432.221 kb on - strandat 1432.224 kb on + strandat 1432.225 kb on - strandat 1432.225 kb on - strandat 1432.225 kb on - strandat 1432.225 kb on - strandat 1432.225 kb on - strandat 1432.225 kb on - strandat 1432.225 kb on - strandat 1432.225 kb on - strandat 1432.575 kb on + strand, within Xcc-8004.1500.1at 1432.576 kb on - strand, within Xcc-8004.1500.1at 1432.618 kb on + strand, within Xcc-8004.1500.1at 1432.618 kb on + strand, within Xcc-8004.1500.1at 1432.618 kb on + strand, within Xcc-8004.1500.1at 1432.618 kb on + strand, within Xcc-8004.1500.1at 1432.619 kb on - strand, within Xcc-8004.1500.1at 1432.619 kb on - strand, within Xcc-8004.1500.1at 1432.619 kb on - strand, within Xcc-8004.1500.1at 1432.619 kb on - strand, within Xcc-8004.1500.1at 1432.619 kb on - strand, within Xcc-8004.1500.1at 1432.619 kb on - strand, within Xcc-8004.1500.1at 1432.666 kb on + strand, within Xcc-8004.1500.1at 1432.666 kb on + strand, within Xcc-8004.1500.1at 1432.667 kb on - strand, within Xcc-8004.1500.1at 1432.667 kb on - strand, within Xcc-8004.1500.1at 1432.667 kb on - strand, within Xcc-8004.1500.1at 1432.667 kb on - strand, within Xcc-8004.1500.1at 1432.667 kb on - strand, within Xcc-8004.1500.1at 1432.667 kb on - strand, within Xcc-8004.1500.1at 1432.667 kb on - strand, within Xcc-8004.1500.1at 1432.675 kb on + strand, within Xcc-8004.1500.1at 1432.676 kb on - strand, within Xcc-8004.1500.1at 1432.676 kb on - strand, within Xcc-8004.1500.1at 1432.682 kb on - strand, within Xcc-8004.1500.1at 1432.729 kb on + strand, within Xcc-8004.1500.1at 1432.729 kb on + strand, within Xcc-8004.1500.1at 1432.729 kb on + strand, within Xcc-8004.1500.1at 1432.730 kb on - strand, within Xcc-8004.1500.1at 1432.730 kb on - strand, within Xcc-8004.1500.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
1,430,241 + -1.6
1,430,241 + -0.8
1,430,308 + +2.7
1,430,318 + +0.8
1,430,318 + +0.9
1,430,318 + -0.1
1,430,375 + -2.5
1,430,375 + +1.3
1,430,375 + -3.9
1,430,375 + -1.1
1,430,376 - -0.5
1,430,376 - +1.4
1,430,376 - -1.4
1,430,459 - -0.1
1,431,239 + -0.5
1,431,239 + +0.3
1,431,240 - -1.1
1,431,250 + -0.6
1,431,441 + Xcc-8004.1499.1 0.22 +0.1
1,431,441 + Xcc-8004.1499.1 0.22 +0.6
1,431,480 + Xcc-8004.1499.1 0.27 +1.1
1,431,493 - Xcc-8004.1499.1 0.28 +0.2
1,431,493 - Xcc-8004.1499.1 0.28 +0.6
1,431,504 + Xcc-8004.1499.1 0.29 -0.1
1,431,504 + Xcc-8004.1499.1 0.29 +1.2
1,431,505 - Xcc-8004.1499.1 0.29 -1.4
1,431,568 - Xcc-8004.1499.1 0.36 -1.2
1,431,913 - Xcc-8004.1499.1 0.73 +1.0
1,432,053 + Xcc-8004.1499.1 0.89 -0.4
1,432,053 + Xcc-8004.1499.1 0.89 +0.1
1,432,053 + Xcc-8004.1499.1 0.89 -1.3
1,432,053 + Xcc-8004.1499.1 0.89 +0.9
1,432,134 + -2.1
1,432,220 + -0.6
1,432,220 + +0.2
1,432,220 + +1.4
1,432,220 + +0.5
1,432,221 - -0.1
1,432,221 - -0.3
1,432,221 - -2.6
1,432,224 + +2.6
1,432,225 - +0.5
1,432,225 - -0.2
1,432,225 - -0.8
1,432,225 - -1.8
1,432,225 - +0.9
1,432,225 - +0.0
1,432,225 - +0.8
1,432,225 - -0.8
1,432,575 + Xcc-8004.1500.1 0.24 +0.7
1,432,576 - Xcc-8004.1500.1 0.24 -0.3
1,432,618 + Xcc-8004.1500.1 0.29 -1.6
1,432,618 + Xcc-8004.1500.1 0.29 -1.7
1,432,618 + Xcc-8004.1500.1 0.29 -0.2
1,432,618 + Xcc-8004.1500.1 0.29 +0.4
1,432,619 - Xcc-8004.1500.1 0.29 -1.2
1,432,619 - Xcc-8004.1500.1 0.29 -1.4
1,432,619 - Xcc-8004.1500.1 0.29 -0.1
1,432,619 - Xcc-8004.1500.1 0.29 -0.5
1,432,619 - Xcc-8004.1500.1 0.29 +1.9
1,432,619 - Xcc-8004.1500.1 0.29 +1.6
1,432,666 + Xcc-8004.1500.1 0.35 -0.3
1,432,666 + Xcc-8004.1500.1 0.35 -0.7
1,432,667 - Xcc-8004.1500.1 0.35 -0.2
1,432,667 - Xcc-8004.1500.1 0.35 -1.6
1,432,667 - Xcc-8004.1500.1 0.35 -1.0
1,432,667 - Xcc-8004.1500.1 0.35 -0.3
1,432,667 - Xcc-8004.1500.1 0.35 +0.0
1,432,667 - Xcc-8004.1500.1 0.35 +0.2
1,432,667 - Xcc-8004.1500.1 0.35 -0.0
1,432,675 + Xcc-8004.1500.1 0.36 +1.1
1,432,676 - Xcc-8004.1500.1 0.36 -2.7
1,432,676 - Xcc-8004.1500.1 0.36 +1.9
1,432,682 - Xcc-8004.1500.1 0.37 -0.4
1,432,729 + Xcc-8004.1500.1 0.42 -0.6
1,432,729 + Xcc-8004.1500.1 0.42 -0.4
1,432,729 + Xcc-8004.1500.1 0.42 +0.3
1,432,730 - Xcc-8004.1500.1 0.42 -1.7
1,432,730 - Xcc-8004.1500.1 0.42 -1.8

Or see this region's nucleotide sequence