Experiment: H2 N-free with 10mM Glycine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02545 and MMP_RS02550 are separated by 249 nucleotides MMP_RS02550 and MMP_RS02555 are separated by 1 nucleotides MMP_RS02555 and MMP_RS02560 are separated by 367 nucleotides MMP_RS02560 and MMP_RS02565 overlap by 8 nucleotides
MMP_RS02545: MMP_RS02545 - hypothetical protein, at 475,377 to 475,787
_RS02545
MMP_RS02550: MMP_RS02550 - helix-turn-helix transcriptional regulator, at 476,037 to 476,249
_RS02550
MMP_RS02555: MMP_RS02555 - AIPR family protein, at 476,251 to 478,203
_RS02555
MMP_RS02560: MMP_RS02560 - DUF2283 domain-containing protein, at 478,571 to 478,954
_RS02560
MMP_RS02565: MMP_RS02565 - hypothetical protein, at 478,947 to 479,240
_RS02565
Position (kb) 476
477
478
479 Strain fitness (log2 ratio) -2
-1
0
1
2 at 475.271 kb on - strand at 475.350 kb on - strand at 475.413 kb on + strand at 475.414 kb on - strand at 475.415 kb on + strand at 475.459 kb on + strand, within MMP_RS02545 at 475.480 kb on + strand, within MMP_RS02545 at 475.504 kb on + strand, within MMP_RS02545 at 475.548 kb on - strand, within MMP_RS02545 at 475.605 kb on + strand, within MMP_RS02545 at 475.710 kb on - strand, within MMP_RS02545 at 475.724 kb on + strand, within MMP_RS02545 at 475.800 kb on - strand at 475.847 kb on - strand at 475.847 kb on - strand at 475.847 kb on - strand at 475.848 kb on + strand at 475.848 kb on + strand at 475.848 kb on + strand at 475.849 kb on - strand at 475.849 kb on - strand at 475.850 kb on + strand at 475.853 kb on - strand at 475.853 kb on - strand at 475.853 kb on - strand at 475.854 kb on + strand at 475.854 kb on + strand at 475.855 kb on - strand at 475.856 kb on + strand at 475.917 kb on - strand at 475.917 kb on - strand at 475.928 kb on + strand at 475.937 kb on - strand at 475.938 kb on + strand at 475.942 kb on + strand at 475.951 kb on + strand at 476.012 kb on + strand at 476.040 kb on - strand at 476.099 kb on + strand, within MMP_RS02550 at 476.116 kb on + strand, within MMP_RS02550 at 476.127 kb on - strand, within MMP_RS02550 at 476.129 kb on - strand, within MMP_RS02550 at 476.170 kb on + strand, within MMP_RS02550 at 476.170 kb on + strand, within MMP_RS02550 at 476.179 kb on - strand, within MMP_RS02550 at 476.253 kb on + strand at 476.255 kb on + strand at 476.290 kb on + strand at 476.314 kb on + strand at 476.337 kb on - strand at 476.377 kb on - strand at 476.408 kb on - strand at 476.409 kb on + strand at 476.445 kb on - strand at 476.446 kb on + strand at 476.453 kb on + strand, within MMP_RS02555 at 476.477 kb on - strand, within MMP_RS02555 at 476.478 kb on + strand, within MMP_RS02555 at 476.478 kb on + strand, within MMP_RS02555 at 476.478 kb on + strand, within MMP_RS02555 at 476.479 kb on - strand, within MMP_RS02555 at 476.510 kb on + strand, within MMP_RS02555 at 476.529 kb on - strand, within MMP_RS02555 at 476.562 kb on + strand, within MMP_RS02555 at 476.620 kb on + strand, within MMP_RS02555 at 476.648 kb on + strand, within MMP_RS02555 at 476.652 kb on - strand, within MMP_RS02555 at 476.685 kb on - strand, within MMP_RS02555 at 476.711 kb on + strand, within MMP_RS02555 at 476.714 kb on + strand, within MMP_RS02555 at 476.773 kb on - strand, within MMP_RS02555 at 476.799 kb on - strand, within MMP_RS02555 at 476.888 kb on - strand, within MMP_RS02555 at 476.894 kb on - strand, within MMP_RS02555 at 476.894 kb on - strand, within MMP_RS02555 at 476.895 kb on + strand, within MMP_RS02555 at 476.897 kb on + strand at 476.897 kb on + strand, within MMP_RS02555 at 476.929 kb on + strand, within MMP_RS02555 at 476.931 kb on - strand, within MMP_RS02555 at 476.946 kb on - strand, within MMP_RS02555 at 476.947 kb on + strand, within MMP_RS02555 at 476.960 kb on + strand, within MMP_RS02555 at 476.983 kb on + strand, within MMP_RS02555 at 477.048 kb on - strand, within MMP_RS02555 at 477.106 kb on + strand, within MMP_RS02555 at 477.106 kb on + strand, within MMP_RS02555 at 477.106 kb on + strand, within MMP_RS02555 at 477.110 kb on - strand, within MMP_RS02555 at 477.111 kb on + strand, within MMP_RS02555 at 477.111 kb on + strand, within MMP_RS02555 at 477.118 kb on + strand, within MMP_RS02555 at 477.153 kb on - strand, within MMP_RS02555 at 477.160 kb on + strand, within MMP_RS02555 at 477.166 kb on - strand, within MMP_RS02555 at 477.180 kb on - strand, within MMP_RS02555 at 477.184 kb on - strand, within MMP_RS02555 at 477.205 kb on + strand, within MMP_RS02555 at 477.218 kb on - strand, within MMP_RS02555 at 477.227 kb on - strand, within MMP_RS02555 at 477.228 kb on + strand, within MMP_RS02555 at 477.228 kb on + strand, within MMP_RS02555 at 477.274 kb on + strand, within MMP_RS02555 at 477.297 kb on - strand, within MMP_RS02555 at 477.300 kb on - strand, within MMP_RS02555 at 477.300 kb on - strand, within MMP_RS02555 at 477.400 kb on + strand, within MMP_RS02555 at 477.400 kb on + strand, within MMP_RS02555 at 477.427 kb on - strand, within MMP_RS02555 at 477.428 kb on + strand, within MMP_RS02555 at 477.475 kb on - strand, within MMP_RS02555 at 477.496 kb on + strand, within MMP_RS02555 at 477.503 kb on - strand, within MMP_RS02555 at 477.503 kb on - strand, within MMP_RS02555 at 477.504 kb on + strand, within MMP_RS02555 at 477.504 kb on + strand, within MMP_RS02555 at 477.504 kb on + strand, within MMP_RS02555 at 477.571 kb on - strand, within MMP_RS02555 at 477.604 kb on - strand, within MMP_RS02555 at 477.726 kb on - strand, within MMP_RS02555 at 477.857 kb on + strand, within MMP_RS02555 at 477.868 kb on + strand, within MMP_RS02555 at 477.925 kb on - strand, within MMP_RS02555 at 477.926 kb on + strand, within MMP_RS02555 at 477.947 kb on + strand, within MMP_RS02555 at 477.949 kb on - strand, within MMP_RS02555 at 477.949 kb on - strand, within MMP_RS02555 at 477.949 kb on - strand, within MMP_RS02555 at 477.950 kb on + strand, within MMP_RS02555 at 477.950 kb on + strand, within MMP_RS02555 at 477.953 kb on - strand, within MMP_RS02555 at 477.953 kb on - strand, within MMP_RS02555 at 477.954 kb on + strand, within MMP_RS02555 at 477.956 kb on - strand, within MMP_RS02555 at 477.957 kb on + strand, within MMP_RS02555 at 477.957 kb on + strand, within MMP_RS02555 at 477.957 kb on + strand, within MMP_RS02555 at 477.958 kb on - strand, within MMP_RS02555 at 477.958 kb on - strand, within MMP_RS02555 at 477.958 kb on - strand, within MMP_RS02555 at 477.958 kb on - strand, within MMP_RS02555 at 477.958 kb on - strand, within MMP_RS02555 at 477.959 kb on + strand, within MMP_RS02555 at 477.959 kb on + strand, within MMP_RS02555 at 477.959 kb on + strand, within MMP_RS02555 at 477.959 kb on + strand, within MMP_RS02555 at 477.959 kb on + strand, within MMP_RS02555 at 477.994 kb on - strand, within MMP_RS02555 at 477.995 kb on + strand, within MMP_RS02555 at 477.996 kb on - strand, within MMP_RS02555 at 477.997 kb on + strand, within MMP_RS02555 at 478.027 kb on + strand at 478.075 kb on - strand at 478.078 kb on - strand at 478.078 kb on - strand at 478.162 kb on - strand at 478.176 kb on - strand at 478.229 kb on - strand at 478.241 kb on + strand at 478.255 kb on + strand at 478.314 kb on + strand at 478.339 kb on - strand at 478.343 kb on - strand at 478.417 kb on + strand at 478.492 kb on - strand at 478.495 kb on + strand at 478.495 kb on + strand at 478.602 kb on + strand at 478.623 kb on - strand, within MMP_RS02560 at 478.631 kb on - strand, within MMP_RS02560 at 478.637 kb on + strand, within MMP_RS02560 at 478.638 kb on - strand, within MMP_RS02560 at 478.639 kb on + strand, within MMP_RS02560 at 478.647 kb on - strand, within MMP_RS02560 at 478.722 kb on + strand, within MMP_RS02560 at 478.722 kb on + strand, within MMP_RS02560 at 478.722 kb on + strand, within MMP_RS02560 at 478.730 kb on - strand, within MMP_RS02560 at 478.730 kb on - strand, within MMP_RS02560 at 478.731 kb on + strand, within MMP_RS02560 at 478.731 kb on + strand, within MMP_RS02560 at 478.778 kb on - strand, within MMP_RS02560 at 478.856 kb on - strand, within MMP_RS02560 at 478.870 kb on + strand, within MMP_RS02560 at 478.896 kb on - strand, within MMP_RS02560 at 478.897 kb on + strand, within MMP_RS02560 at 478.899 kb on + strand, within MMP_RS02560 at 478.899 kb on + strand, within MMP_RS02560 at 478.970 kb on - strand at 479.027 kb on - strand, within MMP_RS02565 at 479.028 kb on + strand, within MMP_RS02565 at 479.036 kb on - strand, within MMP_RS02565 at 479.036 kb on - strand, within MMP_RS02565 at 479.037 kb on + strand, within MMP_RS02565 at 479.042 kb on - strand, within MMP_RS02565 at 479.045 kb on - strand, within MMP_RS02565 at 479.046 kb on + strand, within MMP_RS02565 at 479.046 kb on + strand, within MMP_RS02565 at 479.060 kb on + strand, within MMP_RS02565 at 479.062 kb on - strand, within MMP_RS02565 at 479.062 kb on - strand, within MMP_RS02565 at 479.063 kb on + strand, within MMP_RS02565 at 479.064 kb on - strand, within MMP_RS02565 at 479.064 kb on - strand, within MMP_RS02565 at 479.065 kb on + strand, within MMP_RS02565 at 479.076 kb on + strand, within MMP_RS02565 at 479.135 kb on - strand, within MMP_RS02565 at 479.136 kb on + strand, within MMP_RS02565 at 479.137 kb on - strand, within MMP_RS02565 at 479.138 kb on + strand, within MMP_RS02565 at 479.157 kb on - strand, within MMP_RS02565
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM Glycine remove 475,271 - -0.2 475,350 - +0.5 475,413 + +0.1 475,414 - -1.4 475,415 + -1.3 475,459 + MMP_RS02545 0.20 +0.2 475,480 + MMP_RS02545 0.25 -0.5 475,504 + MMP_RS02545 0.31 -0.2 475,548 - MMP_RS02545 0.42 +0.1 475,605 + MMP_RS02545 0.55 -0.1 475,710 - MMP_RS02545 0.81 +0.3 475,724 + MMP_RS02545 0.84 +0.2 475,800 - +0.1 475,847 - +0.5 475,847 - -0.4 475,847 - +0.0 475,848 + +1.2 475,848 + +0.7 475,848 + +0.5 475,849 - +1.8 475,849 - +0.7 475,850 + +0.5 475,853 - +0.5 475,853 - -0.5 475,853 - +1.2 475,854 + +0.3 475,854 + +0.5 475,855 - +0.1 475,856 + +0.2 475,917 - -0.5 475,917 - +0.4 475,928 + +0.4 475,937 - -0.3 475,938 + +1.3 475,942 + -2.1 475,951 + -0.8 476,012 + +0.2 476,040 - -0.6 476,099 + MMP_RS02550 0.29 -0.2 476,116 + MMP_RS02550 0.37 -0.6 476,127 - MMP_RS02550 0.42 +0.6 476,129 - MMP_RS02550 0.43 -0.7 476,170 + MMP_RS02550 0.62 +0.2 476,170 + MMP_RS02550 0.62 +1.2 476,179 - MMP_RS02550 0.67 +1.6 476,253 + -0.7 476,255 + +0.6 476,290 + -0.4 476,314 + +0.7 476,337 - +1.0 476,377 - +0.9 476,408 - -0.2 476,409 + +1.0 476,445 - -0.8 476,446 + -0.1 476,453 + MMP_RS02555 0.10 +0.9 476,477 - MMP_RS02555 0.12 +1.3 476,478 + MMP_RS02555 0.12 +0.6 476,478 + MMP_RS02555 0.12 +1.1 476,478 + MMP_RS02555 0.12 +0.3 476,479 - MMP_RS02555 0.12 +0.2 476,510 + MMP_RS02555 0.13 +0.5 476,529 - MMP_RS02555 0.14 +0.5 476,562 + MMP_RS02555 0.16 +0.5 476,620 + MMP_RS02555 0.19 -0.6 476,648 + MMP_RS02555 0.20 +1.3 476,652 - MMP_RS02555 0.21 +0.5 476,685 - MMP_RS02555 0.22 +1.6 476,711 + MMP_RS02555 0.24 +0.7 476,714 + MMP_RS02555 0.24 +0.2 476,773 - MMP_RS02555 0.27 +0.7 476,799 - MMP_RS02555 0.28 +0.4 476,888 - MMP_RS02555 0.33 +1.0 476,894 - MMP_RS02555 0.33 +2.1 476,894 - MMP_RS02555 0.33 -0.2 476,895 + MMP_RS02555 0.33 +0.7 476,897 + -0.9 476,897 + MMP_RS02555 0.33 +0.8 476,929 + MMP_RS02555 0.35 +1.5 476,931 - MMP_RS02555 0.35 +0.5 476,946 - MMP_RS02555 0.36 +0.2 476,947 + MMP_RS02555 0.36 +1.8 476,960 + MMP_RS02555 0.36 +1.6 476,983 + MMP_RS02555 0.37 +0.6 477,048 - MMP_RS02555 0.41 -0.1 477,106 + MMP_RS02555 0.44 -0.4 477,106 + MMP_RS02555 0.44 +1.9 477,106 + MMP_RS02555 0.44 +0.0 477,110 - MMP_RS02555 0.44 -0.4 477,111 + MMP_RS02555 0.44 +1.7 477,111 + MMP_RS02555 0.44 +0.2 477,118 + MMP_RS02555 0.44 -0.1 477,153 - MMP_RS02555 0.46 +0.8 477,160 + MMP_RS02555 0.47 +0.3 477,166 - MMP_RS02555 0.47 +0.7 477,180 - MMP_RS02555 0.48 +0.7 477,184 - MMP_RS02555 0.48 -0.1 477,205 + MMP_RS02555 0.49 +0.7 477,218 - MMP_RS02555 0.50 -0.6 477,227 - MMP_RS02555 0.50 +0.8 477,228 + MMP_RS02555 0.50 +1.4 477,228 + MMP_RS02555 0.50 +1.5 477,274 + MMP_RS02555 0.52 -0.3 477,297 - MMP_RS02555 0.54 +0.4 477,300 - MMP_RS02555 0.54 +0.8 477,300 - MMP_RS02555 0.54 -1.1 477,400 + MMP_RS02555 0.59 +1.1 477,400 + MMP_RS02555 0.59 -0.2 477,427 - MMP_RS02555 0.60 +0.7 477,428 + MMP_RS02555 0.60 -0.6 477,475 - MMP_RS02555 0.63 +1.9 477,496 + MMP_RS02555 0.64 -0.2 477,503 - MMP_RS02555 0.64 +0.1 477,503 - MMP_RS02555 0.64 +1.1 477,504 + MMP_RS02555 0.64 +0.3 477,504 + MMP_RS02555 0.64 -0.1 477,504 + MMP_RS02555 0.64 -0.0 477,571 - MMP_RS02555 0.68 -0.6 477,604 - MMP_RS02555 0.69 +0.8 477,726 - MMP_RS02555 0.76 +0.4 477,857 + MMP_RS02555 0.82 +0.3 477,868 + MMP_RS02555 0.83 -0.2 477,925 - MMP_RS02555 0.86 +0.9 477,926 + MMP_RS02555 0.86 +0.2 477,947 + MMP_RS02555 0.87 +1.0 477,949 - MMP_RS02555 0.87 +1.3 477,949 - MMP_RS02555 0.87 -0.5 477,949 - MMP_RS02555 0.87 -0.3 477,950 + MMP_RS02555 0.87 +0.4 477,950 + MMP_RS02555 0.87 -0.2 477,953 - MMP_RS02555 0.87 +0.8 477,953 - MMP_RS02555 0.87 -0.4 477,954 + MMP_RS02555 0.87 +0.1 477,956 - MMP_RS02555 0.87 +0.2 477,957 + MMP_RS02555 0.87 +0.4 477,957 + MMP_RS02555 0.87 +0.9 477,957 + MMP_RS02555 0.87 +1.2 477,958 - MMP_RS02555 0.87 +0.5 477,958 - MMP_RS02555 0.87 +1.0 477,958 - MMP_RS02555 0.87 +0.8 477,958 - MMP_RS02555 0.87 +1.3 477,958 - MMP_RS02555 0.87 +0.3 477,959 + MMP_RS02555 0.87 +0.3 477,959 + MMP_RS02555 0.87 +0.1 477,959 + MMP_RS02555 0.87 +0.4 477,959 + MMP_RS02555 0.87 +0.9 477,959 + MMP_RS02555 0.87 -0.1 477,994 - MMP_RS02555 0.89 -0.1 477,995 + MMP_RS02555 0.89 +0.6 477,996 - MMP_RS02555 0.89 +0.7 477,997 + MMP_RS02555 0.89 -0.7 478,027 + +0.2 478,075 - -0.2 478,078 - -0.4 478,078 - +0.8 478,162 - +1.1 478,176 - +0.6 478,229 - -0.7 478,241 + -0.5 478,255 + +0.6 478,314 + +0.5 478,339 - -0.5 478,343 - +0.1 478,417 + +0.5 478,492 - -0.2 478,495 + +0.8 478,495 + +1.0 478,602 + -1.2 478,623 - MMP_RS02560 0.14 +0.3 478,631 - MMP_RS02560 0.16 -1.7 478,637 + MMP_RS02560 0.17 -0.2 478,638 - MMP_RS02560 0.17 +0.1 478,639 + MMP_RS02560 0.18 +0.9 478,647 - MMP_RS02560 0.20 -0.2 478,722 + MMP_RS02560 0.39 -1.2 478,722 + MMP_RS02560 0.39 +0.9 478,722 + MMP_RS02560 0.39 -0.2 478,730 - MMP_RS02560 0.41 -1.3 478,730 - MMP_RS02560 0.41 -0.9 478,731 + MMP_RS02560 0.42 +1.6 478,731 + MMP_RS02560 0.42 +0.8 478,778 - MMP_RS02560 0.54 +0.2 478,856 - MMP_RS02560 0.74 -0.2 478,870 + MMP_RS02560 0.78 -0.3 478,896 - MMP_RS02560 0.85 +0.9 478,897 + MMP_RS02560 0.85 +0.3 478,899 + MMP_RS02560 0.85 -0.0 478,899 + MMP_RS02560 0.85 -1.2 478,970 - +0.1 479,027 - MMP_RS02565 0.27 +0.3 479,028 + MMP_RS02565 0.28 -0.2 479,036 - MMP_RS02565 0.30 -0.1 479,036 - MMP_RS02565 0.30 -0.9 479,037 + MMP_RS02565 0.31 -0.7 479,042 - MMP_RS02565 0.32 +0.4 479,045 - MMP_RS02565 0.33 +0.7 479,046 + MMP_RS02565 0.34 +0.3 479,046 + MMP_RS02565 0.34 +0.4 479,060 + MMP_RS02565 0.38 -0.3 479,062 - MMP_RS02565 0.39 -0.8 479,062 - MMP_RS02565 0.39 +0.6 479,063 + MMP_RS02565 0.39 -1.3 479,064 - MMP_RS02565 0.40 -0.1 479,064 - MMP_RS02565 0.40 +0.9 479,065 + MMP_RS02565 0.40 +0.4 479,076 + MMP_RS02565 0.44 +0.3 479,135 - MMP_RS02565 0.64 +0.4 479,136 + MMP_RS02565 0.64 +0.2 479,137 - MMP_RS02565 0.65 -0.1 479,138 + MMP_RS02565 0.65 +0.5 479,157 - MMP_RS02565 0.71 -0.7
Or see this region's nucleotide sequence