Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.889.1 and Xcc-8004.890.1 are separated by 48 nucleotides Xcc-8004.890.1 and Xcc-8004.891.1 overlap by 7 nucleotides Xcc-8004.891.1 and Xcc-8004.892.1 overlap by 169 nucleotides Xcc-8004.892.1 and Xcc-8004.893.1 are separated by 87 nucleotides Xcc-8004.893.1 and Xcc-8004.894.1 are separated by 122 nucleotides
Xcc-8004.889.1: Xcc-8004.889.1 - Type IV secretion system protein VirD4, at 836,807 to 837,520
Xcc-8004.889.1
Xcc-8004.890.1: Xcc-8004.890.1 - Mobile element protein, at 837,569 to 837,832
Xcc-8004.890.1
Xcc-8004.891.1: Xcc-8004.891.1 - Mobile element protein, at 837,826 to 838,671
Xcc-8004.891.1
Xcc-8004.892.1: Xcc-8004.892.1 - Coupling protein VirD4, ATPase required for T-DNA transfer, at 838,503 to 839,714
Xcc-8004.892.1
Xcc-8004.893.1: Xcc-8004.893.1 - hypothetical protein, at 839,802 to 840,224
Xcc-8004.893.1
Xcc-8004.894.1: Xcc-8004.894.1 - hypothetical protein, at 840,347 to 840,991
Xcc-8004.894.1
Position (kb) 838
839
840 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 838.669 kb on + strand at 838.754 kb on + strand, within Xcc-8004.892.1 at 838.761 kb on + strand, within Xcc-8004.892.1 at 838.842 kb on + strand, within Xcc-8004.892.1 at 838.882 kb on - strand, within Xcc-8004.892.1 at 839.091 kb on + strand, within Xcc-8004.892.1 at 839.347 kb on - strand, within Xcc-8004.892.1 at 839.451 kb on + strand, within Xcc-8004.892.1 at 839.669 kb on - strand at 839.713 kb on - strand at 839.713 kb on - strand at 839.713 kb on - strand at 839.747 kb on - strand at 839.760 kb on + strand at 839.760 kb on + strand at 839.777 kb on - strand at 839.806 kb on + strand at 839.806 kb on + strand at 839.807 kb on - strand at 839.807 kb on - strand at 839.807 kb on - strand at 839.807 kb on - strand at 839.839 kb on + strand at 839.839 kb on + strand at 839.839 kb on + strand at 839.839 kb on + strand at 839.839 kb on + strand at 839.840 kb on - strand at 839.840 kb on - strand at 839.840 kb on - strand at 839.844 kb on + strand at 839.876 kb on - strand, within Xcc-8004.893.1 at 839.883 kb on + strand, within Xcc-8004.893.1 at 839.883 kb on + strand, within Xcc-8004.893.1 at 839.884 kb on - strand, within Xcc-8004.893.1 at 839.892 kb on + strand, within Xcc-8004.893.1 at 839.893 kb on - strand, within Xcc-8004.893.1 at 839.893 kb on - strand, within Xcc-8004.893.1 at 839.893 kb on - strand, within Xcc-8004.893.1 at 839.968 kb on - strand, within Xcc-8004.893.1 at 839.979 kb on + strand, within Xcc-8004.893.1 at 839.980 kb on - strand, within Xcc-8004.893.1 at 839.980 kb on - strand, within Xcc-8004.893.1 at 839.980 kb on - strand, within Xcc-8004.893.1 at 839.996 kb on + strand, within Xcc-8004.893.1 at 839.996 kb on + strand, within Xcc-8004.893.1 at 839.996 kb on + strand, within Xcc-8004.893.1 at 839.997 kb on - strand, within Xcc-8004.893.1 at 839.997 kb on - strand, within Xcc-8004.893.1 at 839.997 kb on - strand, within Xcc-8004.893.1 at 840.055 kb on + strand, within Xcc-8004.893.1 at 840.055 kb on + strand, within Xcc-8004.893.1 at 840.056 kb on - strand, within Xcc-8004.893.1 at 840.056 kb on - strand, within Xcc-8004.893.1 at 840.056 kb on - strand, within Xcc-8004.893.1 at 840.056 kb on - strand, within Xcc-8004.893.1 at 840.059 kb on + strand, within Xcc-8004.893.1 at 840.059 kb on + strand, within Xcc-8004.893.1 at 840.069 kb on - strand, within Xcc-8004.893.1 at 840.069 kb on - strand, within Xcc-8004.893.1 at 840.069 kb on - strand, within Xcc-8004.893.1 at 840.077 kb on + strand, within Xcc-8004.893.1 at 840.077 kb on + strand, within Xcc-8004.893.1 at 840.078 kb on - strand, within Xcc-8004.893.1 at 840.122 kb on - strand, within Xcc-8004.893.1 at 840.160 kb on + strand, within Xcc-8004.893.1 at 840.160 kb on + strand, within Xcc-8004.893.1 at 840.163 kb on - strand, within Xcc-8004.893.1 at 840.171 kb on + strand, within Xcc-8004.893.1 at 840.197 kb on + strand at 840.197 kb on + strand at 840.251 kb on + strand at 840.281 kb on + strand at 840.301 kb on - strand at 840.313 kb on + strand at 840.314 kb on - strand at 840.346 kb on + strand at 840.346 kb on + strand at 840.347 kb on - strand at 840.355 kb on + strand at 840.356 kb on - strand at 840.371 kb on + strand at 840.372 kb on - strand at 840.372 kb on - strand at 840.372 kb on - strand at 840.393 kb on + strand at 840.463 kb on - strand, within Xcc-8004.894.1 at 840.595 kb on + strand, within Xcc-8004.894.1 at 840.596 kb on - strand, within Xcc-8004.894.1 at 840.596 kb on - strand, within Xcc-8004.894.1 at 840.596 kb on - strand, within Xcc-8004.894.1 at 840.687 kb on + strand, within Xcc-8004.894.1 at 840.699 kb on - strand, within Xcc-8004.894.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 838,669 + +0.4 838,754 + Xcc-8004.892.1 0.21 +1.4 838,761 + Xcc-8004.892.1 0.21 -0.8 838,842 + Xcc-8004.892.1 0.28 -2.1 838,882 - Xcc-8004.892.1 0.31 -0.8 839,091 + Xcc-8004.892.1 0.49 +0.1 839,347 - Xcc-8004.892.1 0.70 -1.2 839,451 + Xcc-8004.892.1 0.78 +1.6 839,669 - +4.3 839,713 - +0.5 839,713 - -0.8 839,713 - +1.8 839,747 - +0.2 839,760 + +1.0 839,760 + -0.4 839,777 - +0.1 839,806 + +0.3 839,806 + -1.3 839,807 - +3.9 839,807 - -0.1 839,807 - -1.4 839,807 - +0.5 839,839 + -1.9 839,839 + +1.2 839,839 + +0.4 839,839 + +2.0 839,839 + +0.2 839,840 - -0.8 839,840 - +1.4 839,840 - -0.3 839,844 + -1.5 839,876 - Xcc-8004.893.1 0.17 -0.8 839,883 + Xcc-8004.893.1 0.19 -0.9 839,883 + Xcc-8004.893.1 0.19 +2.5 839,884 - Xcc-8004.893.1 0.19 -2.5 839,892 + Xcc-8004.893.1 0.21 +1.1 839,893 - Xcc-8004.893.1 0.22 -0.9 839,893 - Xcc-8004.893.1 0.22 -0.4 839,893 - Xcc-8004.893.1 0.22 -2.9 839,968 - Xcc-8004.893.1 0.39 -1.7 839,979 + Xcc-8004.893.1 0.42 +0.7 839,980 - Xcc-8004.893.1 0.42 -1.7 839,980 - Xcc-8004.893.1 0.42 +1.0 839,980 - Xcc-8004.893.1 0.42 -0.1 839,996 + Xcc-8004.893.1 0.46 -0.0 839,996 + Xcc-8004.893.1 0.46 +3.5 839,996 + Xcc-8004.893.1 0.46 +1.0 839,997 - Xcc-8004.893.1 0.46 -1.3 839,997 - Xcc-8004.893.1 0.46 +0.9 839,997 - Xcc-8004.893.1 0.46 +0.6 840,055 + Xcc-8004.893.1 0.60 +0.2 840,055 + Xcc-8004.893.1 0.60 -0.5 840,056 - Xcc-8004.893.1 0.60 +2.1 840,056 - Xcc-8004.893.1 0.60 -0.5 840,056 - Xcc-8004.893.1 0.60 -0.1 840,056 - Xcc-8004.893.1 0.60 +2.7 840,059 + Xcc-8004.893.1 0.61 -2.6 840,059 + Xcc-8004.893.1 0.61 +1.3 840,069 - Xcc-8004.893.1 0.63 -1.1 840,069 - Xcc-8004.893.1 0.63 +0.8 840,069 - Xcc-8004.893.1 0.63 -0.3 840,077 + Xcc-8004.893.1 0.65 +0.2 840,077 + Xcc-8004.893.1 0.65 +0.1 840,078 - Xcc-8004.893.1 0.65 -2.1 840,122 - Xcc-8004.893.1 0.76 +0.6 840,160 + Xcc-8004.893.1 0.85 -0.2 840,160 + Xcc-8004.893.1 0.85 +0.6 840,163 - Xcc-8004.893.1 0.85 +0.5 840,171 + Xcc-8004.893.1 0.87 +2.2 840,197 + -0.2 840,197 + -0.6 840,251 + +0.6 840,281 + +0.2 840,301 - +0.6 840,313 + -0.2 840,314 - -2.5 840,346 + -2.9 840,346 + +0.9 840,347 - +1.0 840,355 + -1.1 840,356 - +0.3 840,371 + +0.1 840,372 - -0.4 840,372 - -2.4 840,372 - +1.4 840,393 + -1.2 840,463 - Xcc-8004.894.1 0.18 +0.3 840,595 + Xcc-8004.894.1 0.38 +0.6 840,596 - Xcc-8004.894.1 0.39 +2.6 840,596 - Xcc-8004.894.1 0.39 +0.2 840,596 - Xcc-8004.894.1 0.39 +0.9 840,687 + Xcc-8004.894.1 0.53 -2.9 840,699 - Xcc-8004.894.1 0.55 +0.2
Or see this region's nucleotide sequence