Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.616.1 and Xcc-8004.618.1 are separated by 145 nucleotides Xcc-8004.618.1 and Xcc-8004.619.1 are separated by 123 nucleotides Xcc-8004.619.1 and Xcc-8004.621.1 are separated by 124 nucleotides
Xcc-8004.616.1: Xcc-8004.616.1 - Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72), at 569,488 to 571,104
Xcc-8004.616.1
Xcc-8004.618.1: Xcc-8004.618.1 - Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85), at 571,250 to 571,828
Xcc-8004.618.1
Xcc-8004.619.1: Xcc-8004.619.1 - Nitrilotriacetate monooxygenase component B (EC 1.14.13.-), at 571,952 to 572,584
Xcc-8004.619.1
Xcc-8004.621.1: Xcc-8004.621.1 - Anthranilate phosphoribosyltransferase (EC 2.4.2.18), at 572,709 to 573,746
Xcc-8004.621.1
Position (kb) 571
572
573 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 570.961 kb on + strand at 570.962 kb on - strand at 571.156 kb on - strand at 571.263 kb on + strand at 571.267 kb on + strand at 571.268 kb on - strand at 571.268 kb on - strand at 571.271 kb on + strand at 571.272 kb on - strand at 571.272 kb on - strand at 571.286 kb on + strand at 571.286 kb on + strand at 571.287 kb on - strand at 571.287 kb on - strand at 571.287 kb on - strand at 571.302 kb on - strand at 571.514 kb on + strand, within Xcc-8004.618.1 at 571.613 kb on + strand, within Xcc-8004.618.1 at 571.614 kb on - strand, within Xcc-8004.618.1 at 571.614 kb on - strand, within Xcc-8004.618.1 at 571.614 kb on - strand, within Xcc-8004.618.1 at 571.628 kb on + strand, within Xcc-8004.618.1 at 571.928 kb on + strand at 571.928 kb on + strand at 571.929 kb on - strand at 572.124 kb on - strand, within Xcc-8004.619.1 at 572.124 kb on - strand, within Xcc-8004.619.1 at 572.124 kb on - strand, within Xcc-8004.619.1 at 572.480 kb on + strand, within Xcc-8004.619.1 at 572.481 kb on - strand, within Xcc-8004.619.1 at 572.481 kb on - strand, within Xcc-8004.619.1 at 572.531 kb on + strand at 572.624 kb on + strand at 572.625 kb on - strand at 572.692 kb on - strand at 572.692 kb on - strand at 573.171 kb on + strand, within Xcc-8004.621.1 at 573.171 kb on + strand, within Xcc-8004.621.1 at 573.171 kb on + strand, within Xcc-8004.621.1 at 573.172 kb on - strand, within Xcc-8004.621.1 at 573.172 kb on - strand, within Xcc-8004.621.1 at 573.448 kb on + strand, within Xcc-8004.621.1 at 573.457 kb on - strand, within Xcc-8004.621.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 570,961 + +2.0 570,962 - +0.4 571,156 - -0.3 571,263 + -0.0 571,267 + +3.2 571,268 - -1.1 571,268 - -3.2 571,271 + +0.4 571,272 - +0.4 571,272 - -0.2 571,286 + +1.0 571,286 + +1.9 571,287 - +1.8 571,287 - -1.3 571,287 - +0.9 571,302 - +0.2 571,514 + Xcc-8004.618.1 0.46 -0.3 571,613 + Xcc-8004.618.1 0.63 -0.9 571,614 - Xcc-8004.618.1 0.63 +2.1 571,614 - Xcc-8004.618.1 0.63 +1.0 571,614 - Xcc-8004.618.1 0.63 -1.6 571,628 + Xcc-8004.618.1 0.65 -0.3 571,928 + +0.2 571,928 + +1.1 571,929 - +1.0 572,124 - Xcc-8004.619.1 0.27 -1.0 572,124 - Xcc-8004.619.1 0.27 -0.5 572,124 - Xcc-8004.619.1 0.27 +0.7 572,480 + Xcc-8004.619.1 0.83 -0.3 572,481 - Xcc-8004.619.1 0.84 -1.2 572,481 - Xcc-8004.619.1 0.84 -0.7 572,531 + +0.3 572,624 + +0.0 572,625 - +0.9 572,692 - -0.3 572,692 - +0.1 573,171 + Xcc-8004.621.1 0.45 -1.0 573,171 + Xcc-8004.621.1 0.45 +0.4 573,171 + Xcc-8004.621.1 0.45 +0.4 573,172 - Xcc-8004.621.1 0.45 +1.2 573,172 - Xcc-8004.621.1 0.45 +0.4 573,448 + Xcc-8004.621.1 0.71 +0.0 573,457 - Xcc-8004.621.1 0.72 +1.4
Or see this region's nucleotide sequence