Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4919.1 and Xcc-8004.4921.1 are separated by 71 nucleotides Xcc-8004.4921.1 and Xcc-8004.4920.1 are separated by 357 nucleotides
Xcc-8004.4919.1: Xcc-8004.4919.1 - FIG01210508: hypothetical protein, at 4,679,270 to 4,680,829
Xcc-8004.4919.1
Xcc-8004.4921.1: Xcc-8004.4921.1 - FIG01213962: hypothetical protein, at 4,680,901 to 4,681,134
Xcc-8004.4921.1
Xcc-8004.4920.1: Xcc-8004.4920.1 - POSSIBLE LINOLEOYL-CoA DESATURASE (DELTA(6)-DESATURASE), at 4,681,492 to 4,682,613
Xcc-8004.4920.1
Position (kb) 4680
4681
4682 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 4679.957 kb on + strand, within Xcc-8004.4919.1 at 4679.957 kb on + strand, within Xcc-8004.4919.1 at 4679.958 kb on - strand, within Xcc-8004.4919.1 at 4680.119 kb on + strand, within Xcc-8004.4919.1 at 4680.120 kb on - strand, within Xcc-8004.4919.1 at 4680.120 kb on - strand, within Xcc-8004.4919.1 at 4680.432 kb on + strand, within Xcc-8004.4919.1 at 4680.458 kb on + strand, within Xcc-8004.4919.1 at 4680.554 kb on + strand, within Xcc-8004.4919.1 at 4680.554 kb on + strand, within Xcc-8004.4919.1 at 4680.554 kb on + strand, within Xcc-8004.4919.1 at 4680.722 kb on + strand at 4680.722 kb on + strand at 4680.722 kb on + strand at 4680.722 kb on + strand at 4680.723 kb on - strand at 4680.850 kb on + strand at 4680.850 kb on + strand at 4680.850 kb on + strand at 4680.850 kb on + strand at 4680.949 kb on + strand, within Xcc-8004.4921.1 at 4680.949 kb on + strand, within Xcc-8004.4921.1 at 4680.950 kb on - strand, within Xcc-8004.4921.1 at 4681.106 kb on - strand, within Xcc-8004.4921.1 at 4681.141 kb on + strand at 4681.141 kb on + strand at 4681.142 kb on - strand at 4681.147 kb on + strand at 4681.163 kb on + strand at 4681.180 kb on - strand at 4681.199 kb on + strand at 4681.199 kb on + strand at 4681.199 kb on + strand at 4681.199 kb on + strand at 4681.200 kb on - strand at 4681.234 kb on + strand at 4681.252 kb on + strand at 4681.252 kb on + strand at 4681.253 kb on - strand at 4681.253 kb on - strand at 4681.373 kb on + strand at 4681.374 kb on - strand at 4681.374 kb on - strand at 4681.374 kb on - strand at 4681.404 kb on - strand at 4681.526 kb on - strand at 4681.610 kb on + strand, within Xcc-8004.4920.1 at 4681.610 kb on + strand, within Xcc-8004.4920.1 at 4681.610 kb on + strand, within Xcc-8004.4920.1 at 4681.611 kb on - strand, within Xcc-8004.4920.1 at 4681.611 kb on - strand, within Xcc-8004.4920.1 at 4681.664 kb on + strand, within Xcc-8004.4920.1 at 4681.689 kb on - strand, within Xcc-8004.4920.1 at 4681.689 kb on - strand, within Xcc-8004.4920.1 at 4681.784 kb on + strand, within Xcc-8004.4920.1 at 4681.785 kb on - strand, within Xcc-8004.4920.1 at 4681.785 kb on - strand, within Xcc-8004.4920.1 at 4681.785 kb on - strand, within Xcc-8004.4920.1 at 4681.962 kb on - strand, within Xcc-8004.4920.1 at 4681.962 kb on - strand, within Xcc-8004.4920.1 at 4682.132 kb on + strand, within Xcc-8004.4920.1 at 4682.132 kb on + strand, within Xcc-8004.4920.1 at 4682.132 kb on + strand, within Xcc-8004.4920.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 4,679,957 + Xcc-8004.4919.1 0.44 -0.3 4,679,957 + Xcc-8004.4919.1 0.44 +0.4 4,679,958 - Xcc-8004.4919.1 0.44 -0.8 4,680,119 + Xcc-8004.4919.1 0.54 -2.4 4,680,120 - Xcc-8004.4919.1 0.54 -1.4 4,680,120 - Xcc-8004.4919.1 0.54 -0.2 4,680,432 + Xcc-8004.4919.1 0.74 +2.5 4,680,458 + Xcc-8004.4919.1 0.76 -0.3 4,680,554 + Xcc-8004.4919.1 0.82 +1.3 4,680,554 + Xcc-8004.4919.1 0.82 +1.2 4,680,554 + Xcc-8004.4919.1 0.82 +1.4 4,680,722 + +1.5 4,680,722 + +0.8 4,680,722 + +0.7 4,680,722 + +0.4 4,680,723 - -0.2 4,680,850 + -0.4 4,680,850 + +0.5 4,680,850 + +1.6 4,680,850 + -0.6 4,680,949 + Xcc-8004.4921.1 0.21 +0.2 4,680,949 + Xcc-8004.4921.1 0.21 +0.1 4,680,950 - Xcc-8004.4921.1 0.21 +1.1 4,681,106 - Xcc-8004.4921.1 0.88 -1.7 4,681,141 + -0.4 4,681,141 + -0.2 4,681,142 - -3.9 4,681,147 + +1.4 4,681,163 + +0.0 4,681,180 - +1.5 4,681,199 + +1.1 4,681,199 + +1.2 4,681,199 + +1.5 4,681,199 + +0.0 4,681,200 - -0.5 4,681,234 + +2.0 4,681,252 + +0.8 4,681,252 + -2.5 4,681,253 - -0.1 4,681,253 - +0.6 4,681,373 + -1.3 4,681,374 - -1.3 4,681,374 - -0.1 4,681,374 - -2.9 4,681,404 - +0.9 4,681,526 - +1.3 4,681,610 + Xcc-8004.4920.1 0.11 -0.9 4,681,610 + Xcc-8004.4920.1 0.11 +1.1 4,681,610 + Xcc-8004.4920.1 0.11 -2.8 4,681,611 - Xcc-8004.4920.1 0.11 -0.5 4,681,611 - Xcc-8004.4920.1 0.11 +0.1 4,681,664 + Xcc-8004.4920.1 0.15 +0.9 4,681,689 - Xcc-8004.4920.1 0.18 -1.7 4,681,689 - Xcc-8004.4920.1 0.18 -0.5 4,681,784 + Xcc-8004.4920.1 0.26 +0.6 4,681,785 - Xcc-8004.4920.1 0.26 -2.5 4,681,785 - Xcc-8004.4920.1 0.26 +0.3 4,681,785 - Xcc-8004.4920.1 0.26 -0.3 4,681,962 - Xcc-8004.4920.1 0.42 +0.0 4,681,962 - Xcc-8004.4920.1 0.42 -1.3 4,682,132 + Xcc-8004.4920.1 0.57 -0.2 4,682,132 + Xcc-8004.4920.1 0.57 +5.3 4,682,132 + Xcc-8004.4920.1 0.57 -1.6
Or see this region's nucleotide sequence