Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4758.1

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4756.1 and Xcc-8004.4757.1 are separated by 50 nucleotidesXcc-8004.4757.1 and Xcc-8004.4758.1 are separated by 104 nucleotidesXcc-8004.4758.1 and Xcc-8004.4759.1 are separated by 69 nucleotides Xcc-8004.4756.1: Xcc-8004.4756.1 - FIG01211576: hypothetical protein, at 4,525,128 to 4,526,486 Xcc-8004.4756.1 Xcc-8004.4757.1: Xcc-8004.4757.1 - Short-chain dehydrogenase/reductase SDR, at 4,526,537 to 4,527,313 Xcc-8004.4757.1 Xcc-8004.4758.1: Xcc-8004.4758.1 - FIG01211401: hypothetical protein, at 4,527,418 to 4,527,633 Xcc-8004.4758.1 Xcc-8004.4759.1: Xcc-8004.4759.1 - protease IV, at 4,527,703 to 4,529,604 Xcc-8004.4759.1 Position (kb) 4527 4528Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4526.538 kb on + strandat 4526.538 kb on + strandat 4527.385 kb on + strandat 4527.385 kb on + strandat 4527.385 kb on + strandat 4527.386 kb on - strandat 4527.438 kb on - strandat 4527.722 kb on + strandat 4527.722 kb on + strandat 4527.723 kb on - strandat 4527.723 kb on - strandat 4527.927 kb on - strand, within Xcc-8004.4759.1at 4528.124 kb on + strand, within Xcc-8004.4759.1at 4528.124 kb on + strand, within Xcc-8004.4759.1at 4528.124 kb on + strand, within Xcc-8004.4759.1at 4528.124 kb on + strand, within Xcc-8004.4759.1at 4528.124 kb on + strand, within Xcc-8004.4759.1at 4528.125 kb on - strand, within Xcc-8004.4759.1at 4528.125 kb on - strand, within Xcc-8004.4759.1at 4528.227 kb on + strand, within Xcc-8004.4759.1at 4528.228 kb on - strand, within Xcc-8004.4759.1at 4528.316 kb on + strand, within Xcc-8004.4759.1at 4528.316 kb on + strand, within Xcc-8004.4759.1at 4528.316 kb on + strand, within Xcc-8004.4759.1at 4528.316 kb on + strand, within Xcc-8004.4759.1at 4528.316 kb on + strand, within Xcc-8004.4759.1at 4528.316 kb on + strand, within Xcc-8004.4759.1at 4528.316 kb on + strand, within Xcc-8004.4759.1at 4528.316 kb on + strand, within Xcc-8004.4759.1at 4528.316 kb on + strand, within Xcc-8004.4759.1at 4528.316 kb on + strand, within Xcc-8004.4759.1at 4528.317 kb on - strand, within Xcc-8004.4759.1at 4528.317 kb on - strand, within Xcc-8004.4759.1at 4528.317 kb on - strand, within Xcc-8004.4759.1at 4528.317 kb on - strand, within Xcc-8004.4759.1at 4528.317 kb on - strand, within Xcc-8004.4759.1at 4528.317 kb on - strand, within Xcc-8004.4759.1at 4528.317 kb on - strand, within Xcc-8004.4759.1at 4528.317 kb on - strand, within Xcc-8004.4759.1at 4528.317 kb on - strand, within Xcc-8004.4759.1at 4528.317 kb on - strand, within Xcc-8004.4759.1at 4528.317 kb on - strand, within Xcc-8004.4759.1at 4528.317 kb on - strand, within Xcc-8004.4759.1at 4528.317 kb on - strand, within Xcc-8004.4759.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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4,526,538 + -1.4
4,526,538 + +0.5
4,527,385 + +1.3
4,527,385 + +0.1
4,527,385 + +1.1
4,527,386 - -0.4
4,527,438 - +0.2
4,527,722 + -0.1
4,527,722 + -0.2
4,527,723 - -0.1
4,527,723 - +0.1
4,527,927 - Xcc-8004.4759.1 0.12 -1.1
4,528,124 + Xcc-8004.4759.1 0.22 +0.9
4,528,124 + Xcc-8004.4759.1 0.22 -1.2
4,528,124 + Xcc-8004.4759.1 0.22 +0.1
4,528,124 + Xcc-8004.4759.1 0.22 -0.1
4,528,124 + Xcc-8004.4759.1 0.22 +0.2
4,528,125 - Xcc-8004.4759.1 0.22 +2.1
4,528,125 - Xcc-8004.4759.1 0.22 -0.5
4,528,227 + Xcc-8004.4759.1 0.28 -0.7
4,528,228 - Xcc-8004.4759.1 0.28 +0.4
4,528,316 + Xcc-8004.4759.1 0.32 -1.7
4,528,316 + Xcc-8004.4759.1 0.32 -0.3
4,528,316 + Xcc-8004.4759.1 0.32 +0.1
4,528,316 + Xcc-8004.4759.1 0.32 -0.5
4,528,316 + Xcc-8004.4759.1 0.32 -0.6
4,528,316 + Xcc-8004.4759.1 0.32 -1.6
4,528,316 + Xcc-8004.4759.1 0.32 -1.7
4,528,316 + Xcc-8004.4759.1 0.32 -0.7
4,528,316 + Xcc-8004.4759.1 0.32 +0.1
4,528,316 + Xcc-8004.4759.1 0.32 -0.5
4,528,317 - Xcc-8004.4759.1 0.32 -3.3
4,528,317 - Xcc-8004.4759.1 0.32 -0.3
4,528,317 - Xcc-8004.4759.1 0.32 -0.3
4,528,317 - Xcc-8004.4759.1 0.32 -1.9
4,528,317 - Xcc-8004.4759.1 0.32 +0.5
4,528,317 - Xcc-8004.4759.1 0.32 -0.4
4,528,317 - Xcc-8004.4759.1 0.32 -0.4
4,528,317 - Xcc-8004.4759.1 0.32 -0.1
4,528,317 - Xcc-8004.4759.1 0.32 -1.2
4,528,317 - Xcc-8004.4759.1 0.32 +0.3
4,528,317 - Xcc-8004.4759.1 0.32 -0.6
4,528,317 - Xcc-8004.4759.1 0.32 -0.3
4,528,317 - Xcc-8004.4759.1 0.32 +0.1

Or see this region's nucleotide sequence