Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2223.1

Experiment: Parafilmed volatile agar plate with no fungus

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Parafilmed volatile agar plate with no fungus
2,172,029	+		Xcc-8004.2222.1	0.36	+0.1
2,172,029	+		Xcc-8004.2222.1	0.36	+0.8
2,172,029	+		Xcc-8004.2222.1	0.36	+0.7
2,172,029	+		Xcc-8004.2222.1	0.36	-0.5
2,172,029	+		Xcc-8004.2222.1	0.36	+0.5
2,172,030	-		Xcc-8004.2222.1	0.36	-0.6
2,172,030	-		Xcc-8004.2222.1	0.36	-0.9
2,172,030	-		Xcc-8004.2222.1	0.36	-0.8
2,172,030	-		Xcc-8004.2222.1	0.36	-0.5
2,172,032	+		Xcc-8004.2222.1	0.36	+0.2
2,172,032	+		Xcc-8004.2222.1	0.36	-1.7
2,172,032	+		Xcc-8004.2222.1	0.36	-1.8
2,172,032	+		Xcc-8004.2222.1	0.36	+1.0
2,172,032	+		Xcc-8004.2222.1	0.36	-0.9
2,172,033	-		Xcc-8004.2222.1	0.36	+1.5
2,172,033	-		Xcc-8004.2222.1	0.36	+0.1
2,172,033	-		Xcc-8004.2222.1	0.36	+1.1
2,172,033	-		Xcc-8004.2222.1	0.36	-0.6
2,172,042	+		Xcc-8004.2222.1	0.37	+0.3
2,172,043	-		Xcc-8004.2222.1	0.37	-0.4
2,172,043	-		Xcc-8004.2222.1	0.37	+0.0
2,172,043	-		Xcc-8004.2222.1	0.37	+0.6
2,172,043	-		Xcc-8004.2222.1	0.37	-0.3
2,172,044	+		Xcc-8004.2222.1	0.38	-1.5
2,172,044	+		Xcc-8004.2222.1	0.38	+0.7
2,172,044	+		Xcc-8004.2222.1	0.38	+2.6
2,172,044	+		Xcc-8004.2222.1	0.38	-0.8
2,172,045	-		Xcc-8004.2222.1	0.38	-2.7
2,172,045	-		Xcc-8004.2222.1	0.38	+2.8
2,172,053	+		Xcc-8004.2222.1	0.39	+0.3
2,172,053	+		Xcc-8004.2222.1	0.39	-3.0
2,172,053	+		Xcc-8004.2222.1	0.39	-0.1
2,172,054	-		Xcc-8004.2222.1	0.39	+2.1
2,172,245	+		Xcc-8004.2222.1	0.61	-2.7
2,172,245	+		Xcc-8004.2222.1	0.61	+0.8
2,172,246	-		Xcc-8004.2222.1	0.61	+0.1
2,172,246	-		Xcc-8004.2222.1	0.61	-2.9
2,172,246	-		Xcc-8004.2222.1	0.61	-0.8
2,172,246	-		Xcc-8004.2222.1	0.61	-0.3
2,172,346	+		Xcc-8004.2222.1	0.72	+0.1
2,172,346	+		Xcc-8004.2222.1	0.72	+0.9
2,172,346	+		Xcc-8004.2222.1	0.72	-1.3
2,172,346	+		Xcc-8004.2222.1	0.72	+0.2
2,172,346	+		Xcc-8004.2222.1	0.72	+1.4
2,172,346	+		Xcc-8004.2222.1	0.72	+0.1
2,172,346	+		Xcc-8004.2222.1	0.72	-1.7
2,172,346	+		Xcc-8004.2222.1	0.72	-0.9
2,172,346	+		Xcc-8004.2222.1	0.72	-2.0
2,172,347	-		Xcc-8004.2222.1	0.72	+0.5
2,172,347	-		Xcc-8004.2222.1	0.72	+0.5
2,172,347	-		Xcc-8004.2222.1	0.72	-1.4
2,172,347	-		Xcc-8004.2222.1	0.72	-0.3
2,172,383	+		Xcc-8004.2222.1	0.76	+0.9
2,172,422	+		Xcc-8004.2222.1	0.81	-0.8
2,172,422	+		Xcc-8004.2222.1	0.81	+0.7
2,172,422	+		Xcc-8004.2222.1	0.81	+1.3
2,172,423	-		Xcc-8004.2222.1	0.81	+1.9
2,172,451	+		Xcc-8004.2222.1	0.84	-1.4
2,172,473	+		Xcc-8004.2222.1	0.87	-1.3
2,172,473	+		Xcc-8004.2222.1	0.87	-2.0
2,172,474	-		Xcc-8004.2222.1	0.87	-2.9
2,172,474	-		Xcc-8004.2222.1	0.87	-1.2
2,172,557	+				-1.1
2,172,557	+				-0.5
2,172,558	-				-1.6
2,172,558	-				-0.4
2,172,616	+				-0.6
2,172,616	+				+0.5
2,172,616	+				-1.1
2,172,617	-				+2.6
2,172,617	-				-2.1
2,172,617	-				+0.4
2,172,617	-				-0.4
2,172,617	-				-0.4
2,172,621	+				+0.9
2,172,687	-				-2.0
2,172,687	-				+0.9
2,172,724	+				-1.6
2,172,724	+				+0.7
2,172,767	+				+0.7
2,172,768	-				+1.8
2,172,768	-				+3.2
2,172,902	-				-2.4
2,172,921	+				-0.9
2,172,921	+				-1.5
2,172,921	+				+0.8
2,172,921	+				+0.5
2,172,921	+				-0.0
2,172,921	+				-0.7
2,172,922	-				-0.6
2,173,147	+		Xcc-8004.2223.1	0.29	-0.5
2,173,147	+		Xcc-8004.2223.1	0.29	-1.0
2,173,148	-		Xcc-8004.2223.1	0.29	-0.1
2,173,148	-		Xcc-8004.2223.1	0.29	-1.2
2,173,177	+		Xcc-8004.2223.1	0.32	+1.6
2,173,177	+		Xcc-8004.2223.1	0.32	-0.3
2,173,177	+		Xcc-8004.2223.1	0.32	+1.6
2,173,178	-		Xcc-8004.2223.1	0.32	+2.0
2,173,178	-		Xcc-8004.2223.1	0.32	+1.0
2,173,178	-		Xcc-8004.2223.1	0.32	-3.0
2,173,178	-		Xcc-8004.2223.1	0.32	-0.1
2,173,249	+		Xcc-8004.2223.1	0.39	+0.5
2,173,249	+		Xcc-8004.2223.1	0.39	+0.2
2,173,249	+		Xcc-8004.2223.1	0.39	+0.2
2,173,250	-		Xcc-8004.2223.1	0.39	+0.5
2,173,250	-		Xcc-8004.2223.1	0.39	-1.7
2,173,261	+		Xcc-8004.2223.1	0.41	+0.6
2,173,276	+		Xcc-8004.2223.1	0.42	-0.4
2,173,276	+		Xcc-8004.2223.1	0.42	-0.0
2,173,276	+		Xcc-8004.2223.1	0.42	-0.2
2,173,277	-		Xcc-8004.2223.1	0.42	+0.5
2,173,477	+		Xcc-8004.2223.1	0.62	+0.4
2,173,477	+		Xcc-8004.2223.1	0.62	-1.4
2,173,478	-		Xcc-8004.2223.1	0.62	+0.4
2,173,478	-		Xcc-8004.2223.1	0.62	+1.6
2,173,549	+		Xcc-8004.2223.1	0.69	-1.9
2,173,550	-		Xcc-8004.2223.1	0.69	+0.7
2,173,639	+		Xcc-8004.2223.1	0.78	-0.0
2,173,639	+		Xcc-8004.2223.1	0.78	-2.3
2,173,640	-		Xcc-8004.2223.1	0.78	+0.9
2,173,640	-		Xcc-8004.2223.1	0.78	-0.5
2,173,640	-		Xcc-8004.2223.1	0.78	-0.4
2,173,640	-		Xcc-8004.2223.1	0.78	-0.2
2,173,641	+		Xcc-8004.2223.1	0.78	-1.2
2,173,641	+		Xcc-8004.2223.1	0.78	-0.3
2,173,641	+		Xcc-8004.2223.1	0.78	-0.6
2,173,642	-		Xcc-8004.2223.1	0.79	+0.8
2,173,873	+				-0.2
2,173,949	+				-0.9
2,173,949	+				-1.1
2,173,949	+				-0.4
2,173,949	+				+0.7
2,173,949	+				-0.1
2,173,949	+				+0.7
2,173,949	+				-1.2
2,173,950	-				+0.9
2,173,950	-				-2.1
2,173,950	-				-0.9
2,173,950	-				-0.0
2,173,950	-				-0.6
2,173,950	-				-1.1
2,173,950	-				+1.1
2,173,950	-				-1.9
2,173,999	-				+0.9
2,174,016	-				+0.8
2,174,031	+				-3.2
2,174,053	+				-1.2
2,174,053	+				+1.2
2,174,053	+				+2.2
2,174,054	-				+0.0
2,174,054	-				-0.3
2,174,129	+				+0.4
2,174,129	+				-0.4
2,174,130	-				+1.0
2,174,146	-				+0.4
2,174,244	+				-1.2
2,174,244	+				-1.3
2,174,244	+				+1.2
2,174,244	+				-0.3
2,174,244	+				-0.3
2,174,244	+				-0.4
2,174,244	+				-1.6
2,174,245	-				-0.9
2,174,245	-				+0.7
2,174,267	+				+1.0
2,174,302	-				-0.0
2,174,376	+				-3.5
2,174,377	-				-3.4
2,174,377	-				-0.9
2,174,377	-				+0.3
2,174,377	-				-1.6
2,174,377	-				+2.5
2,174,377	-				+1.2
2,174,377	-				-0.5
2,174,752	+		Xcc-8004.2224.1	0.16	-1.0
2,174,753	-		Xcc-8004.2224.1	0.16	+1.3
2,174,753	-		Xcc-8004.2224.1	0.16	+0.2
2,174,848	+		Xcc-8004.2224.1	0.23	+0.4
2,174,848	+		Xcc-8004.2224.1	0.23	+0.4
2,174,848	+		Xcc-8004.2224.1	0.23	-1.2
2,174,848	+		Xcc-8004.2224.1	0.23	-0.6
2,174,849	-		Xcc-8004.2224.1	0.23	-1.9