Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1743.1

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1741.1 and Xcc-8004.1742.1 are separated by 137 nucleotidesXcc-8004.1742.1 and Xcc-8004.1743.1 are separated by 25 nucleotidesXcc-8004.1743.1 and Xcc-8004.1744.1 overlap by 4 nucleotidesXcc-8004.1744.1 and Xcc-8004.1745.1 are separated by 1 nucleotides Xcc-8004.1741.1: Xcc-8004.1741.1 - Alcohol dehydrogenase (EC 1.1.1.1), at 1,672,147 to 1,673,154 Xcc-8004.1741.1 Xcc-8004.1742.1: Xcc-8004.1742.1 - hypothetical protein, at 1,673,292 to 1,673,480 Xcc-8004.1742.1 Xcc-8004.1743.1: Xcc-8004.1743.1 - hypothetical protein, at 1,673,506 to 1,674,156 Xcc-8004.1743.1 Xcc-8004.1744.1: Xcc-8004.1744.1 - hypothetical protein, at 1,674,153 to 1,675,103 Xcc-8004.1744.1 Xcc-8004.1745.1: Xcc-8004.1745.1 - Periplasmic aromatic aldehyde oxidoreductase, molybdenum binding subunit YagR @ 4-hydroxybenzoyl-CoA reductase, alpha subunit (EC 1.3.99.20), at 1,675,105 to 1,677,312 Xcc-8004.1745.1 Position (kb) 1673 1674 1675Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1672.540 kb on + strand, within Xcc-8004.1741.1at 1672.541 kb on - strand, within Xcc-8004.1741.1at 1672.542 kb on + strand, within Xcc-8004.1741.1at 1672.542 kb on + strand, within Xcc-8004.1741.1at 1672.542 kb on + strand, within Xcc-8004.1741.1at 1672.543 kb on - strand, within Xcc-8004.1741.1at 1672.543 kb on - strand, within Xcc-8004.1741.1at 1672.774 kb on + strand, within Xcc-8004.1741.1at 1672.775 kb on - strand, within Xcc-8004.1741.1at 1673.306 kb on + strandat 1673.307 kb on - strandat 1673.339 kb on + strand, within Xcc-8004.1742.1at 1673.354 kb on - strand, within Xcc-8004.1742.1at 1673.362 kb on + strand, within Xcc-8004.1742.1at 1673.362 kb on + strand, within Xcc-8004.1742.1at 1673.362 kb on + strand, within Xcc-8004.1742.1at 1673.362 kb on + strand, within Xcc-8004.1742.1at 1673.363 kb on - strand, within Xcc-8004.1742.1at 1673.363 kb on - strand, within Xcc-8004.1742.1at 1673.363 kb on - strand, within Xcc-8004.1742.1at 1673.363 kb on - strand, within Xcc-8004.1742.1at 1673.363 kb on - strand, within Xcc-8004.1742.1at 1673.363 kb on - strand, within Xcc-8004.1742.1at 1673.384 kb on + strand, within Xcc-8004.1742.1at 1673.384 kb on + strand, within Xcc-8004.1742.1at 1673.400 kb on + strand, within Xcc-8004.1742.1at 1673.400 kb on + strand, within Xcc-8004.1742.1at 1673.401 kb on - strand, within Xcc-8004.1742.1at 1673.401 kb on - strand, within Xcc-8004.1742.1at 1673.401 kb on - strand, within Xcc-8004.1742.1at 1673.401 kb on - strand, within Xcc-8004.1742.1at 1673.401 kb on - strand, within Xcc-8004.1742.1at 1673.401 kb on - strand, within Xcc-8004.1742.1at 1673.401 kb on - strand, within Xcc-8004.1742.1at 1673.463 kb on + strandat 1673.463 kb on + strandat 1673.463 kb on + strandat 1673.464 kb on - strandat 1673.464 kb on - strandat 1673.464 kb on - strandat 1673.467 kb on + strandat 1673.468 kb on - strandat 1673.468 kb on - strandat 1673.476 kb on + strandat 1673.476 kb on + strandat 1673.476 kb on + strandat 1673.476 kb on + strandat 1673.476 kb on + strandat 1673.477 kb on - strandat 1673.477 kb on - strandat 1673.477 kb on - strandat 1673.479 kb on - strandat 1673.514 kb on + strandat 1673.514 kb on + strandat 1673.514 kb on + strandat 1673.515 kb on - strandat 1673.515 kb on - strandat 1673.515 kb on - strandat 1674.107 kb on - strandat 1674.324 kb on - strand, within Xcc-8004.1744.1at 1674.370 kb on + strand, within Xcc-8004.1744.1at 1674.377 kb on + strand, within Xcc-8004.1744.1at 1674.513 kb on + strand, within Xcc-8004.1744.1at 1674.519 kb on + strand, within Xcc-8004.1744.1at 1674.520 kb on - strand, within Xcc-8004.1744.1at 1674.520 kb on - strand, within Xcc-8004.1744.1at 1674.520 kb on - strand, within Xcc-8004.1744.1at 1674.520 kb on - strand, within Xcc-8004.1744.1at 1674.732 kb on + strand, within Xcc-8004.1744.1at 1674.732 kb on + strand, within Xcc-8004.1744.1at 1674.733 kb on - strand, within Xcc-8004.1744.1at 1674.758 kb on + strand, within Xcc-8004.1744.1at 1674.834 kb on + strand, within Xcc-8004.1744.1at 1674.861 kb on + strand, within Xcc-8004.1744.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,672,540 + Xcc-8004.1741.1 0.39 -0.9
1,672,541 - Xcc-8004.1741.1 0.39 -0.1
1,672,542 + Xcc-8004.1741.1 0.39 -2.0
1,672,542 + Xcc-8004.1741.1 0.39 +0.4
1,672,542 + Xcc-8004.1741.1 0.39 +0.1
1,672,543 - Xcc-8004.1741.1 0.39 +0.1
1,672,543 - Xcc-8004.1741.1 0.39 +0.5
1,672,774 + Xcc-8004.1741.1 0.62 +0.2
1,672,775 - Xcc-8004.1741.1 0.62 -2.0
1,673,306 + +0.3
1,673,307 - -1.1
1,673,339 + Xcc-8004.1742.1 0.25 +1.5
1,673,354 - Xcc-8004.1742.1 0.33 -0.3
1,673,362 + Xcc-8004.1742.1 0.37 +0.5
1,673,362 + Xcc-8004.1742.1 0.37 +0.7
1,673,362 + Xcc-8004.1742.1 0.37 -1.3
1,673,362 + Xcc-8004.1742.1 0.37 +0.5
1,673,363 - Xcc-8004.1742.1 0.38 +0.8
1,673,363 - Xcc-8004.1742.1 0.38 -2.1
1,673,363 - Xcc-8004.1742.1 0.38 +1.4
1,673,363 - Xcc-8004.1742.1 0.38 -1.4
1,673,363 - Xcc-8004.1742.1 0.38 -0.3
1,673,363 - Xcc-8004.1742.1 0.38 +0.1
1,673,384 + Xcc-8004.1742.1 0.49 -3.1
1,673,384 + Xcc-8004.1742.1 0.49 -1.6
1,673,400 + Xcc-8004.1742.1 0.57 -0.1
1,673,400 + Xcc-8004.1742.1 0.57 +0.0
1,673,401 - Xcc-8004.1742.1 0.58 +1.9
1,673,401 - Xcc-8004.1742.1 0.58 +1.4
1,673,401 - Xcc-8004.1742.1 0.58 +0.4
1,673,401 - Xcc-8004.1742.1 0.58 +0.4
1,673,401 - Xcc-8004.1742.1 0.58 -0.7
1,673,401 - Xcc-8004.1742.1 0.58 -0.4
1,673,401 - Xcc-8004.1742.1 0.58 +0.6
1,673,463 + -2.2
1,673,463 + +0.9
1,673,463 + -2.3
1,673,464 - -1.2
1,673,464 - +0.8
1,673,464 - -0.7
1,673,467 + -1.5
1,673,468 - +0.9
1,673,468 - -1.5
1,673,476 + +0.1
1,673,476 + +0.9
1,673,476 + -0.1
1,673,476 + +1.9
1,673,476 + -1.3
1,673,477 - +0.4
1,673,477 - +0.5
1,673,477 - +0.2
1,673,479 - +0.9
1,673,514 + +0.5
1,673,514 + -2.2
1,673,514 + -0.6
1,673,515 - +0.7
1,673,515 - +1.4
1,673,515 - +1.8
1,674,107 - -0.5
1,674,324 - Xcc-8004.1744.1 0.18 +0.3
1,674,370 + Xcc-8004.1744.1 0.23 -0.2
1,674,377 + Xcc-8004.1744.1 0.24 +0.8
1,674,513 + Xcc-8004.1744.1 0.38 +0.1
1,674,519 + Xcc-8004.1744.1 0.38 -0.5
1,674,520 - Xcc-8004.1744.1 0.39 -0.5
1,674,520 - Xcc-8004.1744.1 0.39 -0.2
1,674,520 - Xcc-8004.1744.1 0.39 -2.1
1,674,520 - Xcc-8004.1744.1 0.39 +0.5
1,674,732 + Xcc-8004.1744.1 0.61 -0.1
1,674,732 + Xcc-8004.1744.1 0.61 +1.5
1,674,733 - Xcc-8004.1744.1 0.61 +0.9
1,674,758 + Xcc-8004.1744.1 0.64 -1.1
1,674,834 + Xcc-8004.1744.1 0.72 +0.1
1,674,861 + Xcc-8004.1744.1 0.74 -0.0

Or see this region's nucleotide sequence