Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03440 and IAI47_03445 are separated by 503 nucleotides IAI47_03445 and IAI47_03450 are separated by 10 nucleotides IAI47_03450 and IAI47_03455 are separated by 72 nucleotides
IAI47_03440: IAI47_03440 - general stress protein, at 719,211 to 719,375
_03440
IAI47_03445: IAI47_03445 - ferritin-like domain-containing protein, at 719,879 to 720,361
_03445
IAI47_03450: IAI47_03450 - ferritin-like domain-containing protein, at 720,372 to 720,878
_03450
IAI47_03455: IAI47_03455 - alpha,alpha-trehalase TreF, at 720,951 to 722,609
_03455
Position (kb) 719
720
721 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 719.066 kb on - strand at 719.139 kb on + strand at 719.140 kb on - strand at 719.140 kb on - strand at 719.168 kb on + strand at 719.168 kb on + strand at 719.191 kb on - strand at 719.191 kb on - strand at 719.210 kb on + strand at 719.210 kb on + strand at 719.210 kb on + strand at 719.210 kb on + strand at 719.211 kb on - strand at 719.211 kb on - strand at 719.211 kb on - strand at 719.303 kb on + strand, within IAI47_03440 at 719.310 kb on - strand, within IAI47_03440 at 719.354 kb on + strand, within IAI47_03440 at 719.354 kb on + strand, within IAI47_03440 at 719.354 kb on + strand, within IAI47_03440 at 719.355 kb on - strand, within IAI47_03440 at 719.355 kb on - strand, within IAI47_03440 at 719.355 kb on - strand, within IAI47_03440 at 719.383 kb on + strand at 719.438 kb on - strand at 719.470 kb on - strand at 719.470 kb on - strand at 719.470 kb on - strand at 719.860 kb on + strand at 719.874 kb on - strand at 719.874 kb on - strand at 719.878 kb on + strand at 719.879 kb on - strand at 719.930 kb on + strand, within IAI47_03445 at 719.931 kb on - strand, within IAI47_03445 at 719.949 kb on + strand, within IAI47_03445 at 719.961 kb on + strand, within IAI47_03445 at 719.962 kb on - strand, within IAI47_03445 at 719.962 kb on - strand, within IAI47_03445 at 719.962 kb on - strand, within IAI47_03445 at 719.962 kb on - strand, within IAI47_03445 at 720.011 kb on - strand, within IAI47_03445 at 720.089 kb on - strand, within IAI47_03445 at 720.212 kb on + strand, within IAI47_03445 at 720.213 kb on - strand, within IAI47_03445 at 720.213 kb on - strand, within IAI47_03445 at 720.213 kb on - strand, within IAI47_03445 at 720.213 kb on - strand, within IAI47_03445 at 720.213 kb on - strand, within IAI47_03445 at 720.227 kb on + strand, within IAI47_03445 at 720.228 kb on - strand, within IAI47_03445 at 720.228 kb on - strand, within IAI47_03445 at 720.228 kb on - strand, within IAI47_03445 at 720.228 kb on - strand, within IAI47_03445 at 720.228 kb on - strand, within IAI47_03445 at 720.228 kb on - strand, within IAI47_03445 at 720.228 kb on - strand, within IAI47_03445 at 720.228 kb on - strand, within IAI47_03445 at 720.282 kb on + strand, within IAI47_03445 at 720.292 kb on + strand, within IAI47_03445 at 720.293 kb on - strand, within IAI47_03445 at 720.293 kb on - strand, within IAI47_03445 at 720.337 kb on - strand at 720.346 kb on + strand at 720.346 kb on + strand at 720.346 kb on + strand at 720.346 kb on + strand at 720.346 kb on + strand at 720.347 kb on - strand at 720.347 kb on - strand at 720.359 kb on + strand at 720.360 kb on - strand at 720.360 kb on - strand at 720.365 kb on - strand at 720.366 kb on + strand at 720.366 kb on + strand at 720.366 kb on + strand at 720.366 kb on + strand at 720.366 kb on + strand at 720.367 kb on - strand at 720.367 kb on - strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.369 kb on + strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.370 kb on - strand at 720.382 kb on + strand at 720.383 kb on - strand at 720.390 kb on + strand at 720.390 kb on + strand at 720.391 kb on - strand at 720.391 kb on - strand at 720.391 kb on - strand at 720.391 kb on - strand at 720.391 kb on - strand at 720.440 kb on + strand, within IAI47_03450 at 720.440 kb on + strand, within IAI47_03450 at 720.441 kb on - strand, within IAI47_03450 at 720.518 kb on + strand, within IAI47_03450 at 720.518 kb on + strand, within IAI47_03450 at 720.519 kb on - strand, within IAI47_03450 at 720.519 kb on - strand, within IAI47_03450 at 720.519 kb on - strand, within IAI47_03450 at 720.629 kb on + strand, within IAI47_03450 at 720.629 kb on + strand, within IAI47_03450 at 720.630 kb on - strand, within IAI47_03450 at 720.672 kb on + strand, within IAI47_03450 at 720.672 kb on + strand, within IAI47_03450 at 720.673 kb on - strand, within IAI47_03450 at 720.673 kb on - strand, within IAI47_03450 at 720.673 kb on - strand, within IAI47_03450 at 720.673 kb on - strand, within IAI47_03450 at 720.702 kb on + strand, within IAI47_03450 at 720.702 kb on + strand, within IAI47_03450 at 720.703 kb on - strand, within IAI47_03450 at 720.703 kb on - strand, within IAI47_03450 at 720.703 kb on - strand, within IAI47_03450 at 720.703 kb on - strand, within IAI47_03450 at 720.733 kb on + strand, within IAI47_03450 at 720.733 kb on + strand, within IAI47_03450 at 720.734 kb on - strand, within IAI47_03450 at 720.734 kb on - strand, within IAI47_03450 at 720.740 kb on + strand, within IAI47_03450 at 720.740 kb on + strand, within IAI47_03450 at 720.740 kb on + strand, within IAI47_03450 at 720.752 kb on - strand, within IAI47_03450 at 720.757 kb on + strand, within IAI47_03450 at 720.757 kb on + strand, within IAI47_03450 at 720.757 kb on + strand, within IAI47_03450 at 720.757 kb on + strand, within IAI47_03450 at 720.757 kb on + strand, within IAI47_03450 at 720.758 kb on - strand, within IAI47_03450 at 720.758 kb on - strand, within IAI47_03450 at 720.758 kb on - strand, within IAI47_03450 at 720.758 kb on - strand, within IAI47_03450 at 720.758 kb on - strand, within IAI47_03450 at 720.758 kb on - strand, within IAI47_03450 at 720.761 kb on + strand, within IAI47_03450 at 720.762 kb on - strand, within IAI47_03450 at 720.876 kb on + strand at 720.877 kb on - strand at 720.877 kb on - strand at 720.877 kb on - strand at 720.877 kb on - strand at 720.948 kb on + strand at 720.948 kb on + strand at 720.948 kb on + strand at 720.949 kb on - strand at 720.952 kb on - strand at 720.963 kb on + strand at 720.963 kb on + strand at 720.963 kb on + strand at 720.964 kb on - strand at 720.964 kb on - strand at 720.964 kb on - strand at 720.973 kb on + strand at 720.973 kb on + strand at 720.973 kb on + strand at 720.973 kb on + strand at 720.973 kb on + strand at 720.973 kb on + strand at 720.973 kb on + strand at 720.973 kb on + strand at 720.973 kb on + strand at 720.973 kb on + strand at 720.973 kb on + strand at 720.973 kb on + strand at 720.973 kb on + strand at 720.973 kb on + strand at 720.974 kb on - strand at 720.974 kb on - strand at 720.974 kb on - strand at 720.974 kb on - strand at 720.974 kb on - strand at 720.974 kb on - strand at 720.989 kb on + strand at 721.078 kb on + strand at 721.078 kb on + strand at 721.078 kb on + strand at 721.079 kb on - strand at 721.079 kb on - strand at 721.079 kb on - strand at 721.079 kb on - strand at 721.086 kb on + strand at 721.108 kb on + strand at 721.109 kb on - strand at 721.109 kb on - strand at 721.109 kb on - strand at 721.116 kb on - strand at 721.116 kb on - strand at 721.124 kb on + strand, within IAI47_03455 at 721.124 kb on + strand, within IAI47_03455 at 721.124 kb on + strand, within IAI47_03455 at 721.125 kb on - strand, within IAI47_03455 at 721.171 kb on + strand, within IAI47_03455 at 721.171 kb on + strand, within IAI47_03455 at 721.171 kb on + strand, within IAI47_03455 at 721.171 kb on + strand, within IAI47_03455 at 721.171 kb on + strand, within IAI47_03455 at 721.171 kb on + strand, within IAI47_03455 at 721.171 kb on + strand, within IAI47_03455 at 721.172 kb on - strand, within IAI47_03455 at 721.175 kb on + strand, within IAI47_03455 at 721.175 kb on + strand, within IAI47_03455 at 721.175 kb on + strand, within IAI47_03455 at 721.176 kb on - strand, within IAI47_03455 at 721.176 kb on - strand, within IAI47_03455 at 721.176 kb on - strand, within IAI47_03455
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50 remove 719,066 - -0.5 719,139 + -0.7 719,140 - -0.4 719,140 - -0.5 719,168 + -0.1 719,168 + +0.3 719,191 - -0.6 719,191 - -0.3 719,210 + +0.8 719,210 + +0.4 719,210 + -0.0 719,210 + -0.5 719,211 - -0.8 719,211 - -0.6 719,211 - -0.9 719,303 + IAI47_03440 0.56 -0.8 719,310 - IAI47_03440 0.60 -1.4 719,354 + IAI47_03440 0.87 -1.4 719,354 + IAI47_03440 0.87 -2.3 719,354 + IAI47_03440 0.87 +0.5 719,355 - IAI47_03440 0.87 -0.9 719,355 - IAI47_03440 0.87 -0.4 719,355 - IAI47_03440 0.87 +0.8 719,383 + +0.0 719,438 - -0.7 719,470 - -0.2 719,470 - -0.7 719,470 - -0.7 719,860 + +0.6 719,874 - -1.6 719,874 - +0.5 719,878 + +0.6 719,879 - -0.6 719,930 + IAI47_03445 0.11 +0.6 719,931 - IAI47_03445 0.11 -0.5 719,949 + IAI47_03445 0.14 -0.8 719,961 + IAI47_03445 0.17 +0.7 719,962 - IAI47_03445 0.17 +0.0 719,962 - IAI47_03445 0.17 -1.1 719,962 - IAI47_03445 0.17 -0.4 719,962 - IAI47_03445 0.17 -1.3 720,011 - IAI47_03445 0.27 -1.7 720,089 - IAI47_03445 0.43 -1.0 720,212 + IAI47_03445 0.69 -1.0 720,213 - IAI47_03445 0.69 -1.1 720,213 - IAI47_03445 0.69 +0.2 720,213 - IAI47_03445 0.69 -1.0 720,213 - IAI47_03445 0.69 -0.8 720,213 - IAI47_03445 0.69 -0.7 720,227 + IAI47_03445 0.72 +0.0 720,228 - IAI47_03445 0.72 -3.2 720,228 - IAI47_03445 0.72 -1.0 720,228 - IAI47_03445 0.72 -1.1 720,228 - IAI47_03445 0.72 -1.9 720,228 - IAI47_03445 0.72 -0.4 720,228 - IAI47_03445 0.72 +0.3 720,228 - IAI47_03445 0.72 +1.6 720,228 - IAI47_03445 0.72 -1.0 720,282 + IAI47_03445 0.83 +1.9 720,292 + IAI47_03445 0.86 +0.6 720,293 - IAI47_03445 0.86 -0.9 720,293 - IAI47_03445 0.86 -1.4 720,337 - -1.8 720,346 + +0.1 720,346 + -1.8 720,346 + +0.5 720,346 + +0.6 720,346 + +0.4 720,347 - -1.3 720,347 - +0.3 720,359 + -0.1 720,360 - -0.6 720,360 - +0.8 720,365 - -0.9 720,366 + -1.1 720,366 + +0.1 720,366 + +1.5 720,366 + -0.8 720,366 + -0.7 720,367 - -0.7 720,367 - +1.4 720,369 + -0.1 720,369 + -0.6 720,369 + +1.1 720,369 + -1.6 720,369 + -0.5 720,369 + -0.8 720,369 + +0.1 720,369 + -0.7 720,369 + +0.9 720,369 + +0.1 720,369 + +0.2 720,369 + +0.5 720,369 + +1.1 720,369 + +0.3 720,369 + +1.4 720,370 - -1.7 720,370 - -1.0 720,370 - -0.3 720,370 - -0.4 720,370 - -0.2 720,370 - -0.1 720,370 - -1.2 720,370 - +0.4 720,370 - +0.4 720,370 - -0.9 720,370 - -1.0 720,370 - -2.2 720,370 - -2.0 720,370 - -0.9 720,370 - -0.3 720,370 - +2.6 720,370 - +0.3 720,370 - -0.5 720,370 - +0.5 720,382 + +0.5 720,383 - -1.2 720,390 + +1.3 720,390 + +1.7 720,391 - -0.1 720,391 - +0.3 720,391 - +0.8 720,391 - -2.4 720,391 - -1.9 720,440 + IAI47_03450 0.13 -0.2 720,440 + IAI47_03450 0.13 +1.0 720,441 - IAI47_03450 0.14 -0.8 720,518 + IAI47_03450 0.29 -0.7 720,518 + IAI47_03450 0.29 +0.7 720,519 - IAI47_03450 0.29 +0.8 720,519 - IAI47_03450 0.29 +0.9 720,519 - IAI47_03450 0.29 -0.0 720,629 + IAI47_03450 0.51 -0.2 720,629 + IAI47_03450 0.51 +0.8 720,630 - IAI47_03450 0.51 -0.7 720,672 + IAI47_03450 0.59 -0.7 720,672 + IAI47_03450 0.59 -1.1 720,673 - IAI47_03450 0.59 +0.0 720,673 - IAI47_03450 0.59 +0.4 720,673 - IAI47_03450 0.59 -1.2 720,673 - IAI47_03450 0.59 -1.9 720,702 + IAI47_03450 0.65 -0.4 720,702 + IAI47_03450 0.65 -0.1 720,703 - IAI47_03450 0.65 +0.0 720,703 - IAI47_03450 0.65 -0.4 720,703 - IAI47_03450 0.65 -1.0 720,703 - IAI47_03450 0.65 -0.3 720,733 + IAI47_03450 0.71 +0.3 720,733 + IAI47_03450 0.71 +0.6 720,734 - IAI47_03450 0.71 -0.9 720,734 - IAI47_03450 0.71 -1.8 720,740 + IAI47_03450 0.73 -0.6 720,740 + IAI47_03450 0.73 -0.2 720,740 + IAI47_03450 0.73 +0.5 720,752 - IAI47_03450 0.75 -1.5 720,757 + IAI47_03450 0.76 -0.1 720,757 + IAI47_03450 0.76 +1.0 720,757 + IAI47_03450 0.76 -0.0 720,757 + IAI47_03450 0.76 +0.0 720,757 + IAI47_03450 0.76 +1.3 720,758 - IAI47_03450 0.76 +1.8 720,758 - IAI47_03450 0.76 +0.0 720,758 - IAI47_03450 0.76 -1.1 720,758 - IAI47_03450 0.76 -1.0 720,758 - IAI47_03450 0.76 -0.8 720,758 - IAI47_03450 0.76 +1.5 720,761 + IAI47_03450 0.77 +0.8 720,762 - IAI47_03450 0.77 -2.2 720,876 + -0.9 720,877 - +0.1 720,877 - +0.9 720,877 - -0.1 720,877 - -0.8 720,948 + -0.2 720,948 + -0.2 720,948 + -1.4 720,949 - -0.3 720,952 - -0.8 720,963 + -0.0 720,963 + -1.5 720,963 + +1.2 720,964 - -1.3 720,964 - -0.3 720,964 - +0.6 720,973 + -1.2 720,973 + -2.5 720,973 + -2.3 720,973 + -1.1 720,973 + -0.4 720,973 + -1.2 720,973 + -2.0 720,973 + -0.0 720,973 + -0.3 720,973 + -0.6 720,973 + +0.4 720,973 + -1.5 720,973 + -0.4 720,973 + -0.9 720,974 - +1.3 720,974 - -0.7 720,974 - -0.2 720,974 - +1.7 720,974 - -1.7 720,974 - -0.7 720,989 + -0.7 721,078 + -0.3 721,078 + -2.7 721,078 + +0.7 721,079 - +2.4 721,079 - +1.1 721,079 - +1.1 721,079 - +1.1 721,086 + -0.2 721,108 + -1.9 721,109 - +0.8 721,109 - +0.6 721,109 - -0.2 721,116 - +0.0 721,116 - -0.2 721,124 + IAI47_03455 0.10 -1.2 721,124 + IAI47_03455 0.10 -1.1 721,124 + IAI47_03455 0.10 -2.1 721,125 - IAI47_03455 0.10 +0.9 721,171 + IAI47_03455 0.13 -0.2 721,171 + IAI47_03455 0.13 -1.1 721,171 + IAI47_03455 0.13 +1.4 721,171 + IAI47_03455 0.13 -1.5 721,171 + IAI47_03455 0.13 -1.1 721,171 + IAI47_03455 0.13 -0.1 721,171 + IAI47_03455 0.13 +1.4 721,172 - IAI47_03455 0.13 +0.3 721,175 + IAI47_03455 0.14 -0.6 721,175 + IAI47_03455 0.14 -0.4 721,175 + IAI47_03455 0.14 -0.7 721,176 - IAI47_03455 0.14 +0.6 721,176 - IAI47_03455 0.14 +1.2 721,176 - IAI47_03455 0.14 -0.6
Or see this region's nucleotide sequence