Experiment: m.b. copper (II) chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08900 and PGA1_c08910 are separated by 245 nucleotides PGA1_c08910 and PGA1_c08920 are separated by 355 nucleotides
PGA1_c08900: PGA1_c08900 - putative capsule polysaccharide export protein KpsS, at 919,552 to 920,844
_c08900
PGA1_c08910: PGA1_c08910 - riboflavin synthase alpha chain, at 921,090 to 921,683
_c08910
PGA1_c08920: PGA1_c08920 - 3,4-dihydroxy-2-butanone 4-phosphate synthase RibB, at 922,039 to 923,160
_c08920
Position (kb) 921
922 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 920.110 kb on + strand, within PGA1_c08900 at 920.112 kb on - strand, within PGA1_c08900 at 920.121 kb on + strand, within PGA1_c08900 at 920.129 kb on - strand, within PGA1_c08900 at 920.306 kb on - strand, within PGA1_c08900 at 920.336 kb on - strand, within PGA1_c08900 at 920.369 kb on - strand, within PGA1_c08900 at 920.374 kb on - strand, within PGA1_c08900 at 920.380 kb on - strand, within PGA1_c08900 at 920.540 kb on - strand, within PGA1_c08900 at 920.562 kb on - strand, within PGA1_c08900 at 920.575 kb on + strand, within PGA1_c08900 at 920.575 kb on + strand, within PGA1_c08900 at 920.583 kb on - strand, within PGA1_c08900 at 920.583 kb on - strand, within PGA1_c08900 at 920.611 kb on + strand, within PGA1_c08900 at 920.632 kb on - strand, within PGA1_c08900 at 920.651 kb on - strand, within PGA1_c08900 at 920.653 kb on + strand, within PGA1_c08900 at 920.656 kb on - strand, within PGA1_c08900 at 920.661 kb on - strand, within PGA1_c08900 at 920.709 kb on + strand, within PGA1_c08900 at 920.731 kb on + strand at 920.766 kb on + strand at 920.784 kb on - strand at 920.790 kb on + strand at 920.823 kb on + strand at 920.875 kb on + strand at 920.886 kb on + strand at 920.914 kb on + strand at 920.914 kb on + strand at 920.914 kb on + strand at 920.919 kb on + strand at 920.922 kb on - strand at 920.922 kb on - strand at 920.922 kb on - strand at 920.927 kb on - strand at 920.927 kb on - strand at 920.927 kb on - strand at 920.942 kb on + strand at 920.945 kb on - strand at 921.663 kb on - strand at 921.708 kb on + strand at 921.708 kb on + strand at 921.750 kb on + strand at 921.760 kb on - strand at 921.839 kb on - strand at 921.849 kb on - strand at 921.849 kb on - strand at 921.875 kb on - strand at 921.878 kb on - strand at 921.880 kb on - strand at 921.903 kb on + strand at 921.903 kb on + strand at 921.910 kb on + strand at 921.910 kb on + strand at 921.930 kb on + strand at 921.956 kb on - strand at 922.008 kb on + strand at 922.016 kb on - strand at 922.016 kb on - strand at 922.016 kb on - strand at 922.023 kb on + strand at 922.044 kb on + strand at 922.060 kb on - strand at 922.174 kb on + strand, within PGA1_c08920 at 922.243 kb on - strand, within PGA1_c08920 at 922.303 kb on + strand, within PGA1_c08920 at 922.368 kb on - strand, within PGA1_c08920 at 922.401 kb on - strand, within PGA1_c08920 at 922.420 kb on - strand, within PGA1_c08920 at 922.422 kb on + strand, within PGA1_c08920 at 922.556 kb on - strand, within PGA1_c08920 at 922.561 kb on - strand, within PGA1_c08920
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.3 mM remove 920,110 + PGA1_c08900 0.43 -0.0 920,112 - PGA1_c08900 0.43 -0.5 920,121 + PGA1_c08900 0.44 -1.0 920,129 - PGA1_c08900 0.45 +1.0 920,306 - PGA1_c08900 0.58 +0.3 920,336 - PGA1_c08900 0.61 +0.7 920,369 - PGA1_c08900 0.63 -1.1 920,374 - PGA1_c08900 0.64 -0.5 920,380 - PGA1_c08900 0.64 -0.2 920,540 - PGA1_c08900 0.76 -0.5 920,562 - PGA1_c08900 0.78 +0.3 920,575 + PGA1_c08900 0.79 +0.8 920,575 + PGA1_c08900 0.79 -0.1 920,583 - PGA1_c08900 0.80 +0.8 920,583 - PGA1_c08900 0.80 -1.1 920,611 + PGA1_c08900 0.82 -0.0 920,632 - PGA1_c08900 0.84 +0.2 920,651 - PGA1_c08900 0.85 +0.7 920,653 + PGA1_c08900 0.85 +1.3 920,656 - PGA1_c08900 0.85 +1.2 920,661 - PGA1_c08900 0.86 +0.0 920,709 + PGA1_c08900 0.89 +0.1 920,731 + -0.9 920,766 + +0.9 920,784 - +0.2 920,790 + -0.0 920,823 + +0.5 920,875 + +1.2 920,886 + +0.7 920,914 + -1.2 920,914 + -0.7 920,914 + +0.8 920,919 + -0.2 920,922 - +1.0 920,922 - +1.1 920,922 - -0.1 920,927 - -0.5 920,927 - +0.5 920,927 - +0.2 920,942 + -1.3 920,945 - -1.3 921,663 - +0.9 921,708 + +0.3 921,708 + +1.6 921,750 + +0.0 921,760 - +0.3 921,839 - +0.1 921,849 - -0.3 921,849 - +0.3 921,875 - -1.4 921,878 - +0.2 921,880 - +0.5 921,903 + -0.1 921,903 + -1.1 921,910 + +0.2 921,910 + +0.4 921,930 + -1.1 921,956 - +0.5 922,008 + -0.5 922,016 - +0.2 922,016 - -0.6 922,016 - -0.0 922,023 + -0.2 922,044 + -2.9 922,060 - +0.0 922,174 + PGA1_c08920 0.12 +0.7 922,243 - PGA1_c08920 0.18 +0.2 922,303 + PGA1_c08920 0.24 +1.6 922,368 - PGA1_c08920 0.29 -0.6 922,401 - PGA1_c08920 0.32 +0.0 922,420 - PGA1_c08920 0.34 -0.2 922,422 + PGA1_c08920 0.34 -0.7 922,556 - PGA1_c08920 0.46 +0.8 922,561 - PGA1_c08920 0.47 -1.5
Or see this region's nucleotide sequence