Experiment: m.b. copper (II) chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05370 and PGA1_c05380 are separated by 266 nucleotides PGA1_c05380 and PGA1_c05390 are separated by 161 nucleotides PGA1_c05390 and PGA1_c05400 are separated by 19 nucleotides
PGA1_c05370: PGA1_c05370 - polyketide synthase, at 538,451 to 544,939
_c05370
PGA1_c05380: PGA1_c05380 - hypothetical protein, at 545,206 to 546,669
_c05380
PGA1_c05390: PGA1_c05390 - glycosyl transferase, at 546,831 to 547,583
_c05390
PGA1_c05400: PGA1_c05400 - putative glycosyl transferase, family 2, at 547,603 to 548,586
_c05400
Position (kb) 545
546
547 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 544.275 kb on + strand, within PGA1_c05370 at 544.278 kb on - strand, within PGA1_c05370 at 544.285 kb on - strand, within PGA1_c05370 at 544.319 kb on - strand at 544.319 kb on - strand at 544.319 kb on - strand at 544.354 kb on + strand at 544.354 kb on + strand at 544.407 kb on + strand at 544.446 kb on + strand at 544.454 kb on - strand at 544.533 kb on - strand at 544.550 kb on - strand at 544.563 kb on - strand at 544.637 kb on - strand at 544.672 kb on - strand at 544.737 kb on + strand at 544.765 kb on + strand at 544.790 kb on - strand at 544.827 kb on + strand at 544.881 kb on + strand at 544.889 kb on - strand at 544.896 kb on + strand at 544.942 kb on + strand at 544.971 kb on + strand at 544.971 kb on + strand at 544.978 kb on + strand at 544.986 kb on - strand at 544.990 kb on + strand at 544.991 kb on - strand at 544.991 kb on - strand at 544.996 kb on - strand at 544.998 kb on - strand at 545.003 kb on - strand at 545.020 kb on - strand at 545.158 kb on + strand at 545.167 kb on - strand at 545.170 kb on + strand at 545.172 kb on - strand at 545.206 kb on + strand at 545.206 kb on + strand at 545.310 kb on + strand at 545.328 kb on - strand at 545.328 kb on - strand at 545.339 kb on - strand at 545.344 kb on - strand at 545.434 kb on + strand, within PGA1_c05380 at 545.458 kb on - strand, within PGA1_c05380 at 545.505 kb on - strand, within PGA1_c05380 at 545.528 kb on - strand, within PGA1_c05380 at 545.597 kb on + strand, within PGA1_c05380 at 545.705 kb on + strand, within PGA1_c05380 at 545.705 kb on - strand, within PGA1_c05380 at 545.719 kb on - strand, within PGA1_c05380 at 545.721 kb on + strand, within PGA1_c05380 at 545.734 kb on - strand, within PGA1_c05380 at 545.748 kb on + strand, within PGA1_c05380 at 545.748 kb on + strand, within PGA1_c05380 at 545.802 kb on - strand, within PGA1_c05380 at 545.876 kb on - strand, within PGA1_c05380 at 545.889 kb on + strand, within PGA1_c05380 at 545.896 kb on - strand, within PGA1_c05380 at 545.898 kb on - strand, within PGA1_c05380 at 545.931 kb on - strand, within PGA1_c05380 at 545.964 kb on + strand, within PGA1_c05380 at 545.998 kb on - strand, within PGA1_c05380 at 546.025 kb on + strand, within PGA1_c05380 at 546.025 kb on + strand, within PGA1_c05380 at 546.030 kb on + strand, within PGA1_c05380 at 546.033 kb on - strand, within PGA1_c05380 at 546.085 kb on + strand, within PGA1_c05380 at 546.085 kb on + strand, within PGA1_c05380 at 546.098 kb on + strand, within PGA1_c05380 at 546.106 kb on - strand, within PGA1_c05380 at 546.138 kb on + strand, within PGA1_c05380 at 546.148 kb on + strand, within PGA1_c05380 at 546.148 kb on + strand, within PGA1_c05380 at 546.148 kb on + strand, within PGA1_c05380 at 546.171 kb on - strand, within PGA1_c05380 at 546.205 kb on - strand, within PGA1_c05380 at 546.206 kb on + strand, within PGA1_c05380 at 546.235 kb on + strand, within PGA1_c05380 at 546.273 kb on - strand, within PGA1_c05380 at 546.348 kb on - strand, within PGA1_c05380 at 546.356 kb on + strand, within PGA1_c05380 at 546.364 kb on - strand, within PGA1_c05380 at 546.364 kb on - strand, within PGA1_c05380 at 546.364 kb on - strand, within PGA1_c05380 at 546.414 kb on + strand, within PGA1_c05380 at 546.464 kb on - strand, within PGA1_c05380 at 546.493 kb on - strand, within PGA1_c05380 at 546.534 kb on + strand at 546.534 kb on + strand at 546.534 kb on + strand at 546.542 kb on - strand at 546.542 kb on - strand at 546.542 kb on - strand at 546.542 kb on - strand at 546.555 kb on + strand at 546.574 kb on + strand at 546.582 kb on - strand at 546.612 kb on + strand at 546.612 kb on + strand at 546.612 kb on + strand at 546.612 kb on + strand at 546.620 kb on - strand at 546.620 kb on - strand at 546.642 kb on + strand at 546.642 kb on + strand at 546.649 kb on - strand at 546.650 kb on - strand at 546.652 kb on + strand at 546.686 kb on - strand at 546.795 kb on + strand at 546.838 kb on - strand at 546.861 kb on + strand at 546.861 kb on + strand at 546.957 kb on - strand, within PGA1_c05390 at 546.995 kb on + strand, within PGA1_c05390 at 546.995 kb on + strand, within PGA1_c05390 at 546.995 kb on + strand, within PGA1_c05390 at 547.003 kb on - strand, within PGA1_c05390 at 547.056 kb on - strand, within PGA1_c05390 at 547.136 kb on + strand, within PGA1_c05390 at 547.210 kb on + strand, within PGA1_c05390 at 547.219 kb on - strand, within PGA1_c05390 at 547.312 kb on + strand, within PGA1_c05390 at 547.407 kb on + strand, within PGA1_c05390 at 547.415 kb on - strand, within PGA1_c05390 at 547.415 kb on - strand, within PGA1_c05390 at 547.415 kb on - strand, within PGA1_c05390 at 547.512 kb on - strand at 547.520 kb on - strand at 547.536 kb on - strand at 547.569 kb on - strand at 547.580 kb on - strand at 547.585 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.3 mM remove 544,275 + PGA1_c05370 0.90 +0.8 544,278 - PGA1_c05370 0.90 +0.2 544,285 - PGA1_c05370 0.90 +0.7 544,319 - -0.2 544,319 - +0.5 544,319 - +0.9 544,354 + +0.1 544,354 + -0.2 544,407 + +1.8 544,446 + +1.2 544,454 - +0.9 544,533 - +0.9 544,550 - +0.6 544,563 - +1.0 544,637 - +0.3 544,672 - +0.7 544,737 + +0.8 544,765 + +1.0 544,790 - +0.9 544,827 + -0.2 544,881 + +0.4 544,889 - +0.7 544,896 + -1.0 544,942 + +0.1 544,971 + -0.9 544,971 + -0.6 544,978 + +1.0 544,986 - +2.4 544,990 + -0.3 544,991 - -0.8 544,991 - +1.3 544,996 - +0.0 544,998 - +0.1 545,003 - -0.9 545,020 - +1.0 545,158 + +0.2 545,167 - -0.5 545,170 + +0.5 545,172 - +0.2 545,206 + +0.5 545,206 + -1.1 545,310 + +1.2 545,328 - -0.5 545,328 - +0.8 545,339 - +0.1 545,344 - +0.7 545,434 + PGA1_c05380 0.16 +0.2 545,458 - PGA1_c05380 0.17 +0.7 545,505 - PGA1_c05380 0.20 -0.9 545,528 - PGA1_c05380 0.22 +0.2 545,597 + PGA1_c05380 0.27 +0.9 545,705 + PGA1_c05380 0.34 +0.0 545,705 - PGA1_c05380 0.34 +0.9 545,719 - PGA1_c05380 0.35 -0.2 545,721 + PGA1_c05380 0.35 -0.6 545,734 - PGA1_c05380 0.36 +0.2 545,748 + PGA1_c05380 0.37 +3.2 545,748 + PGA1_c05380 0.37 -0.1 545,802 - PGA1_c05380 0.41 +1.7 545,876 - PGA1_c05380 0.46 -1.9 545,889 + PGA1_c05380 0.47 +1.3 545,896 - PGA1_c05380 0.47 +0.7 545,898 - PGA1_c05380 0.47 -0.5 545,931 - PGA1_c05380 0.50 +1.1 545,964 + PGA1_c05380 0.52 +0.6 545,998 - PGA1_c05380 0.54 +1.5 546,025 + PGA1_c05380 0.56 +1.0 546,025 + PGA1_c05380 0.56 +0.1 546,030 + PGA1_c05380 0.56 -0.2 546,033 - PGA1_c05380 0.56 +0.5 546,085 + PGA1_c05380 0.60 +0.6 546,085 + PGA1_c05380 0.60 +0.5 546,098 + PGA1_c05380 0.61 +0.8 546,106 - PGA1_c05380 0.61 +0.3 546,138 + PGA1_c05380 0.64 -0.7 546,148 + PGA1_c05380 0.64 -0.8 546,148 + PGA1_c05380 0.64 +0.0 546,148 + PGA1_c05380 0.64 +1.5 546,171 - PGA1_c05380 0.66 -0.2 546,205 - PGA1_c05380 0.68 +0.8 546,206 + PGA1_c05380 0.68 +0.6 546,235 + PGA1_c05380 0.70 -0.1 546,273 - PGA1_c05380 0.73 -0.0 546,348 - PGA1_c05380 0.78 +1.0 546,356 + PGA1_c05380 0.79 +0.7 546,364 - PGA1_c05380 0.79 +0.5 546,364 - PGA1_c05380 0.79 +0.9 546,364 - PGA1_c05380 0.79 +0.4 546,414 + PGA1_c05380 0.83 +1.2 546,464 - PGA1_c05380 0.86 -3.1 546,493 - PGA1_c05380 0.88 +0.5 546,534 + +1.5 546,534 + +1.0 546,534 + +0.7 546,542 - -1.3 546,542 - +1.9 546,542 - -0.1 546,542 - +0.9 546,555 + +2.1 546,574 + -0.3 546,582 - -1.0 546,612 + +0.4 546,612 + +0.5 546,612 + +0.2 546,612 + +0.5 546,620 - +0.2 546,620 - -1.4 546,642 + +1.1 546,642 + -0.5 546,649 - +0.1 546,650 - -0.6 546,652 + +1.4 546,686 - +0.4 546,795 + +1.4 546,838 - +0.4 546,861 + +0.3 546,861 + +0.5 546,957 - PGA1_c05390 0.17 +0.4 546,995 + PGA1_c05390 0.22 +1.1 546,995 + PGA1_c05390 0.22 +1.4 546,995 + PGA1_c05390 0.22 -1.3 547,003 - PGA1_c05390 0.23 +0.7 547,056 - PGA1_c05390 0.30 +0.7 547,136 + PGA1_c05390 0.41 +0.7 547,210 + PGA1_c05390 0.50 +0.9 547,219 - PGA1_c05390 0.52 -0.3 547,312 + PGA1_c05390 0.64 +1.0 547,407 + PGA1_c05390 0.76 +0.6 547,415 - PGA1_c05390 0.78 +0.9 547,415 - PGA1_c05390 0.78 +0.4 547,415 - PGA1_c05390 0.78 +0.7 547,512 - -0.4 547,520 - +0.8 547,536 - -0.2 547,569 - +0.7 547,580 - +1.2 547,585 - -0.1
Or see this region's nucleotide sequence