Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05320

Experiment: m.b. copper (II) chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05300 and PGA1_c05310 are separated by 18 nucleotidesPGA1_c05310 and PGA1_c05320 overlap by 4 nucleotidesPGA1_c05320 and PGA1_c05330 overlap by 4 nucleotidesPGA1_c05330 and PGA1_c05340 overlap by 4 nucleotides PGA1_c05300: PGA1_c05300 - putative glycosyl transferase, at 526,502 to 527,719 _c05300 PGA1_c05310: PGA1_c05310 - putative glycosyl transferase, at 527,738 to 528,580 _c05310 PGA1_c05320: PGA1_c05320 - hypothetical protein, at 528,577 to 531,147 _c05320 PGA1_c05330: PGA1_c05330 - hypothetical protein, at 531,144 to 532,046 _c05330 PGA1_c05340: PGA1_c05340 - 4'-phosphopantetheinyl transferase-like protein, at 532,043 to 532,756 _c05340 Position (kb) 528 529 530 531 532Strain fitness (log2 ratio) -2 -1 0 1 2at 527.578 kb on - strand, within PGA1_c05300at 527.590 kb on + strand, within PGA1_c05300at 527.618 kb on - strandat 527.636 kb on + strandat 527.686 kb on + strandat 527.729 kb on + strandat 527.731 kb on + strandat 527.827 kb on - strand, within PGA1_c05310at 527.850 kb on - strand, within PGA1_c05310at 527.862 kb on - strand, within PGA1_c05310at 527.866 kb on + strand, within PGA1_c05310at 527.876 kb on + strand, within PGA1_c05310at 527.891 kb on + strand, within PGA1_c05310at 527.953 kb on + strand, within PGA1_c05310at 528.030 kb on + strand, within PGA1_c05310at 528.085 kb on - strand, within PGA1_c05310at 528.096 kb on + strand, within PGA1_c05310at 528.122 kb on + strand, within PGA1_c05310at 528.132 kb on - strand, within PGA1_c05310at 528.132 kb on - strand, within PGA1_c05310at 528.146 kb on + strand, within PGA1_c05310at 528.156 kb on + strand, within PGA1_c05310at 528.159 kb on - strand, within PGA1_c05310at 528.164 kb on - strand, within PGA1_c05310at 528.172 kb on + strand, within PGA1_c05310at 528.177 kb on - strand, within PGA1_c05310at 528.198 kb on + strand, within PGA1_c05310at 528.240 kb on + strand, within PGA1_c05310at 528.240 kb on - strand, within PGA1_c05310at 528.252 kb on + strand, within PGA1_c05310at 528.252 kb on + strand, within PGA1_c05310at 528.257 kb on + strand, within PGA1_c05310at 528.260 kb on - strand, within PGA1_c05310at 528.260 kb on - strand, within PGA1_c05310at 528.260 kb on - strand, within PGA1_c05310at 528.313 kb on - strand, within PGA1_c05310at 528.313 kb on - strand, within PGA1_c05310at 528.363 kb on + strand, within PGA1_c05310at 528.363 kb on + strand, within PGA1_c05310at 528.363 kb on + strand, within PGA1_c05310at 528.363 kb on + strand, within PGA1_c05310at 528.371 kb on - strand, within PGA1_c05310at 528.371 kb on - strand, within PGA1_c05310at 528.371 kb on - strand, within PGA1_c05310at 528.382 kb on + strand, within PGA1_c05310at 528.390 kb on + strand, within PGA1_c05310at 528.424 kb on + strand, within PGA1_c05310at 528.441 kb on + strand, within PGA1_c05310at 528.522 kb on + strandat 528.545 kb on - strandat 528.637 kb on + strandat 528.637 kb on + strandat 528.669 kb on - strandat 528.688 kb on - strandat 528.692 kb on + strandat 528.702 kb on + strandat 528.710 kb on - strandat 528.710 kb on - strandat 528.725 kb on + strandat 528.725 kb on + strandat 528.791 kb on - strandat 528.804 kb on + strandat 528.854 kb on - strand, within PGA1_c05320at 528.884 kb on + strand, within PGA1_c05320at 528.888 kb on + strand, within PGA1_c05320at 528.892 kb on - strand, within PGA1_c05320at 528.951 kb on + strand, within PGA1_c05320at 528.996 kb on + strand, within PGA1_c05320at 529.011 kb on - strand, within PGA1_c05320at 529.021 kb on + strand, within PGA1_c05320at 529.028 kb on + strand, within PGA1_c05320at 529.028 kb on + strand, within PGA1_c05320at 529.028 kb on + strand, within PGA1_c05320at 529.036 kb on - strand, within PGA1_c05320at 529.126 kb on - strand, within PGA1_c05320at 529.171 kb on - strand, within PGA1_c05320at 529.171 kb on - strand, within PGA1_c05320at 529.245 kb on - strand, within PGA1_c05320at 529.295 kb on + strand, within PGA1_c05320at 529.295 kb on + strand, within PGA1_c05320at 529.295 kb on + strand, within PGA1_c05320at 529.298 kb on - strand, within PGA1_c05320at 529.303 kb on - strand, within PGA1_c05320at 529.303 kb on - strand, within PGA1_c05320at 529.336 kb on - strand, within PGA1_c05320at 529.336 kb on - strand, within PGA1_c05320at 529.385 kb on + strand, within PGA1_c05320at 529.439 kb on - strand, within PGA1_c05320at 529.454 kb on + strand, within PGA1_c05320at 529.457 kb on - strand, within PGA1_c05320at 529.598 kb on + strand, within PGA1_c05320at 529.606 kb on - strand, within PGA1_c05320at 529.688 kb on - strand, within PGA1_c05320at 529.688 kb on - strand, within PGA1_c05320at 529.693 kb on + strand, within PGA1_c05320at 529.712 kb on + strand, within PGA1_c05320at 529.720 kb on - strand, within PGA1_c05320at 529.722 kb on + strand, within PGA1_c05320at 529.836 kb on + strand, within PGA1_c05320at 529.836 kb on + strand, within PGA1_c05320at 529.903 kb on - strand, within PGA1_c05320at 529.919 kb on + strand, within PGA1_c05320at 529.944 kb on + strand, within PGA1_c05320at 529.952 kb on - strand, within PGA1_c05320at 530.061 kb on + strand, within PGA1_c05320at 530.083 kb on + strand, within PGA1_c05320at 530.083 kb on + strand, within PGA1_c05320at 530.083 kb on + strand, within PGA1_c05320at 530.091 kb on - strand, within PGA1_c05320at 530.091 kb on - strand, within PGA1_c05320at 530.113 kb on - strand, within PGA1_c05320at 530.113 kb on - strand, within PGA1_c05320at 530.113 kb on - strand, within PGA1_c05320at 530.113 kb on - strand, within PGA1_c05320at 530.113 kb on - strand, within PGA1_c05320at 530.113 kb on - strand, within PGA1_c05320at 530.120 kb on + strand, within PGA1_c05320at 530.120 kb on + strand, within PGA1_c05320at 530.120 kb on + strand, within PGA1_c05320at 530.128 kb on - strand, within PGA1_c05320at 530.128 kb on - strand, within PGA1_c05320at 530.143 kb on + strand, within PGA1_c05320at 530.183 kb on - strand, within PGA1_c05320at 530.268 kb on - strand, within PGA1_c05320at 530.273 kb on - strand, within PGA1_c05320at 530.273 kb on - strand, within PGA1_c05320at 530.283 kb on - strand, within PGA1_c05320at 530.477 kb on + strand, within PGA1_c05320at 530.559 kb on + strand, within PGA1_c05320at 530.562 kb on - strand, within PGA1_c05320at 530.570 kb on + strand, within PGA1_c05320at 530.578 kb on - strand, within PGA1_c05320at 530.578 kb on - strand, within PGA1_c05320at 530.589 kb on + strand, within PGA1_c05320at 530.597 kb on - strand, within PGA1_c05320at 530.600 kb on + strand, within PGA1_c05320at 530.688 kb on - strand, within PGA1_c05320at 530.747 kb on - strand, within PGA1_c05320at 530.758 kb on + strand, within PGA1_c05320at 530.758 kb on + strand, within PGA1_c05320at 530.758 kb on + strand, within PGA1_c05320at 530.763 kb on + strand, within PGA1_c05320at 530.763 kb on + strand, within PGA1_c05320at 530.767 kb on + strand, within PGA1_c05320at 530.814 kb on + strand, within PGA1_c05320at 530.843 kb on + strand, within PGA1_c05320at 530.942 kb on + strandat 530.942 kb on + strandat 530.947 kb on + strandat 530.950 kb on - strandat 530.952 kb on + strandat 530.960 kb on - strandat 530.960 kb on - strandat 530.967 kb on + strandat 531.027 kb on - strandat 531.030 kb on + strandat 531.037 kb on + strandat 531.066 kb on + strandat 531.124 kb on + strandat 531.168 kb on - strandat 531.168 kb on - strandat 531.214 kb on - strandat 531.228 kb on + strandat 531.309 kb on + strand, within PGA1_c05330at 531.420 kb on + strand, within PGA1_c05330at 531.428 kb on - strand, within PGA1_c05330at 531.445 kb on + strand, within PGA1_c05330at 531.571 kb on + strand, within PGA1_c05330at 531.582 kb on - strand, within PGA1_c05330at 531.633 kb on + strand, within PGA1_c05330at 531.633 kb on + strand, within PGA1_c05330at 531.638 kb on + strand, within PGA1_c05330at 531.641 kb on - strand, within PGA1_c05330at 531.641 kb on - strand, within PGA1_c05330at 531.646 kb on - strand, within PGA1_c05330at 531.721 kb on + strand, within PGA1_c05330at 531.736 kb on + strand, within PGA1_c05330at 531.801 kb on + strand, within PGA1_c05330at 531.840 kb on - strand, within PGA1_c05330at 531.902 kb on + strand, within PGA1_c05330at 531.931 kb on - strand, within PGA1_c05330at 531.960 kb on + strandat 531.982 kb on - strandat 532.017 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.3 mM
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527,578 - PGA1_c05300 0.88 +0.2
527,590 + PGA1_c05300 0.89 -0.0
527,618 - -0.3
527,636 + -1.0
527,686 + +0.7
527,729 + -0.7
527,731 + -0.4
527,827 - PGA1_c05310 0.11 +1.0
527,850 - PGA1_c05310 0.13 -0.2
527,862 - PGA1_c05310 0.15 +1.2
527,866 + PGA1_c05310 0.15 -0.4
527,876 + PGA1_c05310 0.16 -1.2
527,891 + PGA1_c05310 0.18 +0.4
527,953 + PGA1_c05310 0.26 +0.7
528,030 + PGA1_c05310 0.35 -0.2
528,085 - PGA1_c05310 0.41 +0.8
528,096 + PGA1_c05310 0.42 +0.8
528,122 + PGA1_c05310 0.46 +0.8
528,132 - PGA1_c05310 0.47 +0.9
528,132 - PGA1_c05310 0.47 -1.6
528,146 + PGA1_c05310 0.48 +0.7
528,156 + PGA1_c05310 0.50 -0.1
528,159 - PGA1_c05310 0.50 +1.3
528,164 - PGA1_c05310 0.51 -2.2
528,172 + PGA1_c05310 0.51 +2.0
528,177 - PGA1_c05310 0.52 +0.1
528,198 + PGA1_c05310 0.55 -0.6
528,240 + PGA1_c05310 0.60 +0.8
528,240 - PGA1_c05310 0.60 -1.4
528,252 + PGA1_c05310 0.61 +1.7
528,252 + PGA1_c05310 0.61 +0.0
528,257 + PGA1_c05310 0.62 +0.9
528,260 - PGA1_c05310 0.62 +1.4
528,260 - PGA1_c05310 0.62 -0.2
528,260 - PGA1_c05310 0.62 +0.1
528,313 - PGA1_c05310 0.68 +0.3
528,313 - PGA1_c05310 0.68 -0.3
528,363 + PGA1_c05310 0.74 +1.3
528,363 + PGA1_c05310 0.74 +0.6
528,363 + PGA1_c05310 0.74 -0.4
528,363 + PGA1_c05310 0.74 -0.7
528,371 - PGA1_c05310 0.75 +0.7
528,371 - PGA1_c05310 0.75 -0.9
528,371 - PGA1_c05310 0.75 +0.3
528,382 + PGA1_c05310 0.76 +2.7
528,390 + PGA1_c05310 0.77 +0.5
528,424 + PGA1_c05310 0.81 +0.8
528,441 + PGA1_c05310 0.83 +0.1
528,522 + +1.5
528,545 - -0.2
528,637 + +0.4
528,637 + +0.7
528,669 - -0.4
528,688 - -0.7
528,692 + -1.5
528,702 + -0.2
528,710 - +2.4
528,710 - +0.3
528,725 + -0.0
528,725 + -0.3
528,791 - +0.4
528,804 + +1.4
528,854 - PGA1_c05320 0.11 +1.1
528,884 + PGA1_c05320 0.12 +0.9
528,888 + PGA1_c05320 0.12 +0.6
528,892 - PGA1_c05320 0.12 -0.3
528,951 + PGA1_c05320 0.15 -0.1
528,996 + PGA1_c05320 0.16 +0.1
529,011 - PGA1_c05320 0.17 +0.3
529,021 + PGA1_c05320 0.17 +1.0
529,028 + PGA1_c05320 0.18 -1.1
529,028 + PGA1_c05320 0.18 +0.8
529,028 + PGA1_c05320 0.18 -0.7
529,036 - PGA1_c05320 0.18 +0.6
529,126 - PGA1_c05320 0.21 +0.3
529,171 - PGA1_c05320 0.23 +0.7
529,171 - PGA1_c05320 0.23 +0.0
529,245 - PGA1_c05320 0.26 -0.3
529,295 + PGA1_c05320 0.28 +0.2
529,295 + PGA1_c05320 0.28 -0.6
529,295 + PGA1_c05320 0.28 -0.5
529,298 - PGA1_c05320 0.28 +1.1
529,303 - PGA1_c05320 0.28 -0.1
529,303 - PGA1_c05320 0.28 +1.4
529,336 - PGA1_c05320 0.30 -1.7
529,336 - PGA1_c05320 0.30 -0.4
529,385 + PGA1_c05320 0.31 +0.1
529,439 - PGA1_c05320 0.34 +1.3
529,454 + PGA1_c05320 0.34 -0.1
529,457 - PGA1_c05320 0.34 +0.8
529,598 + PGA1_c05320 0.40 +0.3
529,606 - PGA1_c05320 0.40 -0.0
529,688 - PGA1_c05320 0.43 -0.6
529,688 - PGA1_c05320 0.43 -0.4
529,693 + PGA1_c05320 0.43 +0.8
529,712 + PGA1_c05320 0.44 +0.2
529,720 - PGA1_c05320 0.44 -1.3
529,722 + PGA1_c05320 0.45 +0.3
529,836 + PGA1_c05320 0.49 +1.4
529,836 + PGA1_c05320 0.49 -1.1
529,903 - PGA1_c05320 0.52 +0.8
529,919 + PGA1_c05320 0.52 -2.4
529,944 + PGA1_c05320 0.53 +0.2
529,952 - PGA1_c05320 0.53 -0.3
530,061 + PGA1_c05320 0.58 +1.1
530,083 + PGA1_c05320 0.59 -1.0
530,083 + PGA1_c05320 0.59 +0.5
530,083 + PGA1_c05320 0.59 +0.6
530,091 - PGA1_c05320 0.59 -0.8
530,091 - PGA1_c05320 0.59 -0.7
530,113 - PGA1_c05320 0.60 +0.5
530,113 - PGA1_c05320 0.60 -0.4
530,113 - PGA1_c05320 0.60 +0.5
530,113 - PGA1_c05320 0.60 +0.7
530,113 - PGA1_c05320 0.60 -0.1
530,113 - PGA1_c05320 0.60 -0.5
530,120 + PGA1_c05320 0.60 +0.2
530,120 + PGA1_c05320 0.60 +0.5
530,120 + PGA1_c05320 0.60 +0.2
530,128 - PGA1_c05320 0.60 +0.3
530,128 - PGA1_c05320 0.60 +0.4
530,143 + PGA1_c05320 0.61 +0.1
530,183 - PGA1_c05320 0.62 +0.1
530,268 - PGA1_c05320 0.66 -0.4
530,273 - PGA1_c05320 0.66 +0.2
530,273 - PGA1_c05320 0.66 +0.4
530,283 - PGA1_c05320 0.66 +0.6
530,477 + PGA1_c05320 0.74 -0.2
530,559 + PGA1_c05320 0.77 +0.7
530,562 - PGA1_c05320 0.77 +0.9
530,570 + PGA1_c05320 0.78 +0.6
530,578 - PGA1_c05320 0.78 -0.2
530,578 - PGA1_c05320 0.78 +1.1
530,589 + PGA1_c05320 0.78 +0.6
530,597 - PGA1_c05320 0.79 +1.2
530,600 + PGA1_c05320 0.79 -1.0
530,688 - PGA1_c05320 0.82 -1.7
530,747 - PGA1_c05320 0.84 -0.7
530,758 + PGA1_c05320 0.85 -0.2
530,758 + PGA1_c05320 0.85 +1.0
530,758 + PGA1_c05320 0.85 +0.5
530,763 + PGA1_c05320 0.85 +0.5
530,763 + PGA1_c05320 0.85 +0.5
530,767 + PGA1_c05320 0.85 -0.1
530,814 + PGA1_c05320 0.87 -0.1
530,843 + PGA1_c05320 0.88 +0.8
530,942 + -0.8
530,942 + +0.4
530,947 + +0.0
530,950 - +0.3
530,952 + -0.1
530,960 - +0.5
530,960 - +0.7
530,967 + +0.4
531,027 - -0.8
531,030 + +0.2
531,037 + -0.0
531,066 + +0.8
531,124 + -0.9
531,168 - +0.2
531,168 - +1.1
531,214 - -1.3
531,228 + +0.9
531,309 + PGA1_c05330 0.18 -0.8
531,420 + PGA1_c05330 0.31 -0.2
531,428 - PGA1_c05330 0.31 +1.1
531,445 + PGA1_c05330 0.33 +0.5
531,571 + PGA1_c05330 0.47 +0.5
531,582 - PGA1_c05330 0.49 -2.4
531,633 + PGA1_c05330 0.54 -0.3
531,633 + PGA1_c05330 0.54 -0.4
531,638 + PGA1_c05330 0.55 +0.7
531,641 - PGA1_c05330 0.55 +0.1
531,641 - PGA1_c05330 0.55 -0.0
531,646 - PGA1_c05330 0.56 -0.1
531,721 + PGA1_c05330 0.64 -0.2
531,736 + PGA1_c05330 0.66 +1.4
531,801 + PGA1_c05330 0.73 -1.5
531,840 - PGA1_c05330 0.77 +1.6
531,902 + PGA1_c05330 0.84 +0.9
531,931 - PGA1_c05330 0.87 -0.2
531,960 + -0.3
531,982 - +0.5
532,017 - +1.0

Or see this region's nucleotide sequence