Experiment: m.b. copper (II) chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03120 and PGA1_c03130 are separated by 178 nucleotides PGA1_c03130 and PGA1_c03140 are separated by 35 nucleotides PGA1_c03140 and PGA1_c03150 are separated by 132 nucleotides
PGA1_c03120: PGA1_c03120 - hypothetical protein, at 300,891 to 301,745
_c03120
PGA1_c03130: PGA1_c03130 - Putative transcriptional regulator, at 301,924 to 302,481
_c03130
PGA1_c03140: PGA1_c03140 - putative tRNA threonylcarbamoyladenosine biosynthesis protein, at 302,517 to 303,464
_c03140
PGA1_c03150: PGA1_c03150 - putative acyl-CoA dehydrogenase, at 303,597 to 305,303
_c03150
Position (kb) 302
303
304 Strain fitness (log2 ratio) -2
-1
0
1
2 at 301.565 kb on + strand, within PGA1_c03120 at 301.687 kb on + strand at 301.687 kb on + strand at 301.713 kb on + strand at 301.733 kb on + strand at 301.741 kb on - strand at 301.750 kb on + strand at 301.753 kb on - strand at 301.829 kb on + strand at 301.829 kb on + strand at 301.829 kb on + strand at 301.829 kb on + strand at 301.830 kb on + strand at 301.832 kb on - strand at 301.837 kb on - strand at 301.865 kb on + strand at 301.884 kb on + strand at 301.907 kb on + strand at 301.907 kb on + strand at 301.927 kb on + strand at 301.969 kb on - strand at 302.008 kb on + strand, within PGA1_c03130 at 302.008 kb on + strand, within PGA1_c03130 at 302.008 kb on + strand, within PGA1_c03130 at 302.016 kb on - strand, within PGA1_c03130 at 302.016 kb on - strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.105 kb on + strand, within PGA1_c03130 at 302.113 kb on - strand, within PGA1_c03130 at 302.113 kb on - strand, within PGA1_c03130 at 302.113 kb on - strand, within PGA1_c03130 at 302.113 kb on - strand, within PGA1_c03130 at 302.113 kb on - strand, within PGA1_c03130 at 302.113 kb on - strand, within PGA1_c03130 at 302.113 kb on - strand, within PGA1_c03130 at 302.113 kb on - strand, within PGA1_c03130 at 302.113 kb on - strand, within PGA1_c03130 at 302.113 kb on - strand, within PGA1_c03130 at 302.119 kb on + strand, within PGA1_c03130 at 302.153 kb on - strand, within PGA1_c03130 at 302.157 kb on + strand, within PGA1_c03130 at 302.165 kb on - strand, within PGA1_c03130 at 302.170 kb on - strand, within PGA1_c03130 at 302.170 kb on - strand, within PGA1_c03130 at 302.201 kb on + strand, within PGA1_c03130 at 302.223 kb on - strand, within PGA1_c03130 at 302.233 kb on + strand, within PGA1_c03130 at 302.276 kb on + strand, within PGA1_c03130 at 302.276 kb on + strand, within PGA1_c03130 at 302.276 kb on + strand, within PGA1_c03130 at 302.276 kb on + strand, within PGA1_c03130 at 302.276 kb on + strand, within PGA1_c03130 at 302.276 kb on + strand, within PGA1_c03130 at 302.276 kb on + strand, within PGA1_c03130 at 302.276 kb on + strand, within PGA1_c03130 at 302.276 kb on + strand, within PGA1_c03130 at 302.276 kb on + strand, within PGA1_c03130 at 302.276 kb on + strand, within PGA1_c03130 at 302.284 kb on - strand, within PGA1_c03130 at 302.284 kb on - strand, within PGA1_c03130 at 302.284 kb on - strand, within PGA1_c03130 at 302.284 kb on - strand, within PGA1_c03130 at 302.284 kb on - strand, within PGA1_c03130 at 302.284 kb on - strand, within PGA1_c03130 at 302.284 kb on - strand, within PGA1_c03130 at 302.284 kb on - strand, within PGA1_c03130 at 302.284 kb on - strand, within PGA1_c03130 at 302.284 kb on - strand, within PGA1_c03130 at 302.284 kb on - strand, within PGA1_c03130 at 302.286 kb on + strand, within PGA1_c03130 at 302.286 kb on + strand, within PGA1_c03130 at 302.286 kb on + strand, within PGA1_c03130 at 302.286 kb on + strand, within PGA1_c03130 at 302.294 kb on - strand, within PGA1_c03130 at 302.294 kb on - strand, within PGA1_c03130 at 302.301 kb on + strand, within PGA1_c03130 at 302.301 kb on + strand, within PGA1_c03130 at 302.312 kb on + strand, within PGA1_c03130 at 302.375 kb on + strand, within PGA1_c03130 at 302.375 kb on + strand, within PGA1_c03130 at 302.438 kb on + strand at 302.454 kb on - strand at 302.463 kb on - strand at 302.465 kb on + strand at 302.470 kb on + strand at 302.503 kb on - strand at 303.535 kb on - strand at 303.540 kb on - strand at 303.553 kb on - strand at 303.559 kb on + strand at 303.562 kb on - strand at 303.564 kb on + strand at 303.564 kb on + strand at 303.564 kb on + strand at 303.572 kb on - strand at 303.589 kb on + strand at 303.594 kb on + strand at 303.597 kb on - strand at 303.623 kb on + strand at 303.697 kb on + strand at 303.764 kb on - strand at 303.764 kb on - strand at 303.885 kb on - strand, within PGA1_c03150 at 303.885 kb on - strand, within PGA1_c03150 at 303.885 kb on - strand, within PGA1_c03150 at 303.912 kb on + strand, within PGA1_c03150 at 303.913 kb on - strand, within PGA1_c03150 at 303.957 kb on - strand, within PGA1_c03150 at 303.972 kb on + strand, within PGA1_c03150 at 303.986 kb on + strand, within PGA1_c03150 at 304.008 kb on + strand, within PGA1_c03150 at 304.083 kb on - strand, within PGA1_c03150 at 304.097 kb on + strand, within PGA1_c03150 at 304.110 kb on - strand, within PGA1_c03150 at 304.123 kb on + strand, within PGA1_c03150 at 304.147 kb on + strand, within PGA1_c03150 at 304.175 kb on + strand, within PGA1_c03150 at 304.175 kb on + strand, within PGA1_c03150 at 304.186 kb on + strand, within PGA1_c03150 at 304.192 kb on - strand, within PGA1_c03150 at 304.192 kb on - strand, within PGA1_c03150 at 304.217 kb on - strand, within PGA1_c03150 at 304.227 kb on - strand, within PGA1_c03150 at 304.235 kb on - strand, within PGA1_c03150 at 304.296 kb on - strand, within PGA1_c03150 at 304.341 kb on - strand, within PGA1_c03150 at 304.348 kb on + strand, within PGA1_c03150 at 304.356 kb on - strand, within PGA1_c03150 at 304.358 kb on + strand, within PGA1_c03150 at 304.373 kb on - strand, within PGA1_c03150 at 304.373 kb on - strand, within PGA1_c03150 at 304.441 kb on - strand, within PGA1_c03150 at 304.449 kb on - strand, within PGA1_c03150
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.3 mM remove 301,565 + PGA1_c03120 0.79 -0.9 301,687 + -2.5 301,687 + -1.1 301,713 + -0.2 301,733 + -1.5 301,741 - -1.5 301,750 + -0.7 301,753 - -0.3 301,829 + -1.9 301,829 + -0.3 301,829 + +0.0 301,829 + +0.4 301,830 + +0.3 301,832 - +0.3 301,837 - +0.1 301,865 + -0.1 301,884 + +0.8 301,907 + -1.2 301,907 + +0.6 301,927 + -1.2 301,969 - -1.9 302,008 + PGA1_c03130 0.15 +0.9 302,008 + PGA1_c03130 0.15 +1.1 302,008 + PGA1_c03130 0.15 +0.2 302,016 - PGA1_c03130 0.16 +1.0 302,016 - PGA1_c03130 0.16 +1.0 302,105 + PGA1_c03130 0.32 -0.4 302,105 + PGA1_c03130 0.32 -0.1 302,105 + PGA1_c03130 0.32 +0.1 302,105 + PGA1_c03130 0.32 -0.9 302,105 + PGA1_c03130 0.32 +0.4 302,105 + PGA1_c03130 0.32 -0.2 302,105 + PGA1_c03130 0.32 +2.0 302,105 + PGA1_c03130 0.32 -1.9 302,105 + PGA1_c03130 0.32 -1.5 302,105 + PGA1_c03130 0.32 -1.0 302,105 + PGA1_c03130 0.32 -0.6 302,105 + PGA1_c03130 0.32 +0.6 302,105 + PGA1_c03130 0.32 +1.5 302,105 + PGA1_c03130 0.32 -1.5 302,105 + PGA1_c03130 0.32 -1.3 302,105 + PGA1_c03130 0.32 -0.3 302,105 + PGA1_c03130 0.32 -0.2 302,105 + PGA1_c03130 0.32 -0.1 302,105 + PGA1_c03130 0.32 -1.1 302,113 - PGA1_c03130 0.34 -0.5 302,113 - PGA1_c03130 0.34 +0.3 302,113 - PGA1_c03130 0.34 +1.1 302,113 - PGA1_c03130 0.34 -1.1 302,113 - PGA1_c03130 0.34 +0.4 302,113 - PGA1_c03130 0.34 -0.7 302,113 - PGA1_c03130 0.34 +1.2 302,113 - PGA1_c03130 0.34 -0.8 302,113 - PGA1_c03130 0.34 -1.0 302,113 - PGA1_c03130 0.34 -0.5 302,119 + PGA1_c03130 0.35 -0.3 302,153 - PGA1_c03130 0.41 -0.7 302,157 + PGA1_c03130 0.42 +0.3 302,165 - PGA1_c03130 0.43 -0.1 302,170 - PGA1_c03130 0.44 +0.1 302,170 - PGA1_c03130 0.44 +0.8 302,201 + PGA1_c03130 0.50 -1.2 302,223 - PGA1_c03130 0.54 -0.9 302,233 + PGA1_c03130 0.55 +0.6 302,276 + PGA1_c03130 0.63 +0.2 302,276 + PGA1_c03130 0.63 +0.0 302,276 + PGA1_c03130 0.63 -0.0 302,276 + PGA1_c03130 0.63 +0.1 302,276 + PGA1_c03130 0.63 +0.6 302,276 + PGA1_c03130 0.63 -0.1 302,276 + PGA1_c03130 0.63 -1.6 302,276 + PGA1_c03130 0.63 -0.0 302,276 + PGA1_c03130 0.63 -0.8 302,276 + PGA1_c03130 0.63 +0.4 302,276 + PGA1_c03130 0.63 -0.2 302,284 - PGA1_c03130 0.65 +0.6 302,284 - PGA1_c03130 0.65 +0.2 302,284 - PGA1_c03130 0.65 -2.2 302,284 - PGA1_c03130 0.65 +1.2 302,284 - PGA1_c03130 0.65 -1.5 302,284 - PGA1_c03130 0.65 +0.6 302,284 - PGA1_c03130 0.65 -2.1 302,284 - PGA1_c03130 0.65 -0.2 302,284 - PGA1_c03130 0.65 -0.1 302,284 - PGA1_c03130 0.65 +1.2 302,284 - PGA1_c03130 0.65 +0.0 302,286 + PGA1_c03130 0.65 +1.2 302,286 + PGA1_c03130 0.65 -0.7 302,286 + PGA1_c03130 0.65 -0.4 302,286 + PGA1_c03130 0.65 +0.8 302,294 - PGA1_c03130 0.66 +1.4 302,294 - PGA1_c03130 0.66 -0.2 302,301 + PGA1_c03130 0.68 +0.3 302,301 + PGA1_c03130 0.68 -0.1 302,312 + PGA1_c03130 0.70 -0.4 302,375 + PGA1_c03130 0.81 -0.6 302,375 + PGA1_c03130 0.81 -0.8 302,438 + -0.0 302,454 - -0.1 302,463 - +0.3 302,465 + -0.2 302,470 + +0.9 302,503 - -1.7 303,535 - -0.5 303,540 - +0.2 303,553 - -0.2 303,559 + +0.4 303,562 - -0.8 303,564 + +1.0 303,564 + -0.6 303,564 + +0.2 303,572 - +0.1 303,589 + +0.2 303,594 + -0.4 303,597 - +1.0 303,623 + -0.5 303,697 + +0.6 303,764 - -0.0 303,764 - +0.8 303,885 - PGA1_c03150 0.17 -0.8 303,885 - PGA1_c03150 0.17 +0.1 303,885 - PGA1_c03150 0.17 -0.5 303,912 + PGA1_c03150 0.18 +0.3 303,913 - PGA1_c03150 0.19 +0.0 303,957 - PGA1_c03150 0.21 -0.5 303,972 + PGA1_c03150 0.22 -0.3 303,986 + PGA1_c03150 0.23 -0.2 304,008 + PGA1_c03150 0.24 -0.2 304,083 - PGA1_c03150 0.28 -0.6 304,097 + PGA1_c03150 0.29 -0.7 304,110 - PGA1_c03150 0.30 +0.5 304,123 + PGA1_c03150 0.31 +0.3 304,147 + PGA1_c03150 0.32 -0.5 304,175 + PGA1_c03150 0.34 +0.5 304,175 + PGA1_c03150 0.34 +0.7 304,186 + PGA1_c03150 0.35 -0.1 304,192 - PGA1_c03150 0.35 -0.1 304,192 - PGA1_c03150 0.35 -0.4 304,217 - PGA1_c03150 0.36 +0.7 304,227 - PGA1_c03150 0.37 -0.1 304,235 - PGA1_c03150 0.37 +0.4 304,296 - PGA1_c03150 0.41 -0.2 304,341 - PGA1_c03150 0.44 +1.0 304,348 + PGA1_c03150 0.44 -0.7 304,356 - PGA1_c03150 0.44 -0.4 304,358 + PGA1_c03150 0.45 +0.7 304,373 - PGA1_c03150 0.45 +0.2 304,373 - PGA1_c03150 0.45 -0.6 304,441 - PGA1_c03150 0.49 -0.7 304,449 - PGA1_c03150 0.50 -0.2
Or see this region's nucleotide sequence