Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2370

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2369 and DvMF_2370 are separated by 116 nucleotidesDvMF_2370 and DvMF_2371 overlap by 4 nucleotides DvMF_2369: DvMF_2369 - TPR repeat-containing protein (RefSeq), at 2,989,135 to 2,989,950 _2369 DvMF_2370: DvMF_2370 - carbamoyl phosphate synthase small subunit (RefSeq), at 2,990,067 to 2,991,197 _2370 DvMF_2371: DvMF_2371 - 3-deoxy-manno-octulosonate cytidylyltransferase (RefSeq), at 2,991,194 to 2,992,006 _2371 Position (kb) 2990 2991 2992Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2989.265 kb on + strand, within DvMF_2369at 2989.379 kb on - strand, within DvMF_2369at 2989.446 kb on - strand, within DvMF_2369at 2989.627 kb on - strand, within DvMF_2369at 2989.672 kb on - strand, within DvMF_2369at 2989.672 kb on - strand, within DvMF_2369at 2989.695 kb on - strand, within DvMF_2369at 2989.695 kb on - strand, within DvMF_2369at 2989.700 kb on - strand, within DvMF_2369at 2989.739 kb on + strand, within DvMF_2369at 2989.749 kb on + strand, within DvMF_2369at 2989.862 kb on + strand, within DvMF_2369at 2989.869 kb on - strandat 2990.095 kb on + strandat 2990.103 kb on - strandat 2990.149 kb on + strandat 2990.250 kb on + strand, within DvMF_2370at 2990.250 kb on + strand, within DvMF_2370at 2990.250 kb on + strand, within DvMF_2370at 2990.590 kb on - strand, within DvMF_2370at 2990.870 kb on + strand, within DvMF_2370at 2992.026 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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2,989,265 + DvMF_2369 0.16 -1.2
2,989,379 - DvMF_2369 0.30 -1.8
2,989,446 - DvMF_2369 0.38 -1.1
2,989,627 - DvMF_2369 0.60 -0.8
2,989,672 - DvMF_2369 0.66 -1.5
2,989,672 - DvMF_2369 0.66 -0.9
2,989,695 - DvMF_2369 0.69 -0.8
2,989,695 - DvMF_2369 0.69 -1.7
2,989,700 - DvMF_2369 0.69 -1.8
2,989,739 + DvMF_2369 0.74 -0.8
2,989,749 + DvMF_2369 0.75 -1.1
2,989,862 + DvMF_2369 0.89 -0.9
2,989,869 - -1.5
2,990,095 + -5.7
2,990,103 - -5.0
2,990,149 + -2.2
2,990,250 + DvMF_2370 0.16 -6.4
2,990,250 + DvMF_2370 0.16 -1.6
2,990,250 + DvMF_2370 0.16 -4.2
2,990,590 - DvMF_2370 0.46 -4.2
2,990,870 + DvMF_2370 0.71 -4.4
2,992,026 - -0.3

Or see this region's nucleotide sequence