Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1865

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1864 and DvMF_1865 are separated by 149 nucleotidesDvMF_1865 and DvMF_1866 are separated by 156 nucleotides DvMF_1864: DvMF_1864 - phosphate acetyltransferase (RefSeq), at 2,286,534 to 2,288,648 _1864 DvMF_1865: DvMF_1865 - acetate kinase (RefSeq), at 2,288,798 to 2,290,012 _1865 DvMF_1866: DvMF_1866 - DRTGG domain protein (RefSeq), at 2,290,169 to 2,291,230 _1866 Position (kb) 2288 2289 2290 2291Strain fitness (log2 ratio) -1 0 1at 2290.136 kb on + strandat 2290.349 kb on - strand, within DvMF_1866at 2290.548 kb on + strand, within DvMF_1866at 2290.572 kb on + strand, within DvMF_1866at 2290.697 kb on - strand, within DvMF_1866at 2290.884 kb on - strand, within DvMF_1866

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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2,290,136 + -0.9
2,290,349 - DvMF_1866 0.17 -0.5
2,290,548 + DvMF_1866 0.36 +0.1
2,290,572 + DvMF_1866 0.38 -1.1
2,290,697 - DvMF_1866 0.50 -0.9
2,290,884 - DvMF_1866 0.67 -1.2

Or see this region's nucleotide sequence