Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1550

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1549 and DvMF_1550 are separated by 2 nucleotidesDvMF_1550 and DvMF_1551 are separated by 212 nucleotides DvMF_1549: DvMF_1549 - pyruvate carboxyltransferase (RefSeq), at 1,912,568 to 1,914,397 _1549 DvMF_1550: DvMF_1550 - hypothetical protein (RefSeq), at 1,914,400 to 1,915,182 _1550 DvMF_1551: DvMF_1551 - hypothetical protein (RefSeq), at 1,915,395 to 1,916,093 _1551 Position (kb) 1914 1915 1916Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 1913.492 kb on - strand, within DvMF_1549at 1913.527 kb on + strand, within DvMF_1549at 1913.544 kb on + strand, within DvMF_1549at 1913.721 kb on + strand, within DvMF_1549at 1914.164 kb on + strand, within DvMF_1549at 1914.197 kb on - strand, within DvMF_1549at 1914.392 kb on + strandat 1914.692 kb on + strand, within DvMF_1550at 1914.700 kb on - strand, within DvMF_1550at 1914.769 kb on - strand, within DvMF_1550at 1914.824 kb on + strand, within DvMF_1550at 1914.858 kb on - strand, within DvMF_1550at 1914.858 kb on - strand, within DvMF_1550at 1914.914 kb on - strand, within DvMF_1550at 1914.926 kb on + strand, within DvMF_1550at 1915.009 kb on - strand, within DvMF_1550at 1915.038 kb on - strand, within DvMF_1550at 1915.169 kb on - strandat 1915.326 kb on + strandat 1915.534 kb on + strand, within DvMF_1551at 1915.593 kb on - strand, within DvMF_1551at 1915.642 kb on + strand, within DvMF_1551at 1915.696 kb on + strand, within DvMF_1551at 1915.742 kb on + strand, within DvMF_1551at 1915.751 kb on - strand, within DvMF_1551at 1916.033 kb on + strandat 1916.072 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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1,913,492 - DvMF_1549 0.50 -6.9
1,913,527 + DvMF_1549 0.52 -3.7
1,913,544 + DvMF_1549 0.53 -1.2
1,913,721 + DvMF_1549 0.63 -5.8
1,914,164 + DvMF_1549 0.87 -3.5
1,914,197 - DvMF_1549 0.89 -6.6
1,914,392 + -2.4
1,914,692 + DvMF_1550 0.37 -1.1
1,914,700 - DvMF_1550 0.38 -0.4
1,914,769 - DvMF_1550 0.47 -0.7
1,914,824 + DvMF_1550 0.54 -2.5
1,914,858 - DvMF_1550 0.58 -0.5
1,914,858 - DvMF_1550 0.58 -0.6
1,914,914 - DvMF_1550 0.66 -0.4
1,914,926 + DvMF_1550 0.67 -1.5
1,915,009 - DvMF_1550 0.78 -0.5
1,915,038 - DvMF_1550 0.81 -0.8
1,915,169 - -1.3
1,915,326 + -0.7
1,915,534 + DvMF_1551 0.20 -0.3
1,915,593 - DvMF_1551 0.28 -0.5
1,915,642 + DvMF_1551 0.35 -0.3
1,915,696 + DvMF_1551 0.43 -0.4
1,915,742 + DvMF_1551 0.50 -0.9
1,915,751 - DvMF_1551 0.51 -0.5
1,916,033 + +0.0
1,916,072 + -0.3

Or see this region's nucleotide sequence