Experiment: MoLS4 with Nitrite as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nifE and DVUA0010 are separated by 642 nucleotides DVUA0010 and nifK are separated by 190 nucleotides
DVUA0009: nifE - nitrogenase MoFe cofactor biosynthesis protein NifE domain protein (TIGR), at 11,959 to 13,665
nifE
DVUA0010: DVUA0010 - ferredoxin, 2fe-2s (TIGR), at 14,308 to 14,610
DVUA0010
DVUA0011: nifK - nitrogenase molybdenum-iron protein beta chain (TIGR), at 14,801 to 16,186
nifK
Position (kb) 14
15 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 13.363 kb on - strand, within nifE at 13.367 kb on - strand, within nifE at 13.369 kb on + strand, within nifE at 13.369 kb on + strand, within nifE at 13.374 kb on + strand, within nifE at 13.374 kb on + strand, within nifE at 13.374 kb on + strand, within nifE at 13.377 kb on - strand, within nifE at 13.382 kb on - strand, within nifE at 13.394 kb on + strand, within nifE at 13.411 kb on + strand, within nifE at 13.428 kb on + strand, within nifE at 13.466 kb on + strand, within nifE at 13.466 kb on + strand, within nifE at 13.468 kb on + strand, within nifE at 13.471 kb on - strand, within nifE at 13.474 kb on - strand, within nifE at 13.474 kb on - strand, within nifE at 13.513 kb on - strand at 13.566 kb on - strand at 13.581 kb on - strand at 13.733 kb on + strand at 13.774 kb on + strand at 13.819 kb on + strand at 13.826 kb on + strand at 13.863 kb on - strand at 13.900 kb on + strand at 13.939 kb on + strand at 13.944 kb on + strand at 13.947 kb on - strand at 13.947 kb on - strand at 13.947 kb on - strand at 13.958 kb on + strand at 14.001 kb on + strand at 14.023 kb on + strand at 14.045 kb on - strand at 14.069 kb on + strand at 14.069 kb on + strand at 14.077 kb on - strand at 14.077 kb on - strand at 14.082 kb on - strand at 14.082 kb on - strand at 14.082 kb on - strand at 14.106 kb on + strand at 14.109 kb on - strand at 14.325 kb on - strand at 14.330 kb on - strand at 14.509 kb on - strand, within DVUA0010 at 14.600 kb on + strand at 14.619 kb on + strand at 14.659 kb on - strand at 14.665 kb on + strand at 14.720 kb on - strand at 14.732 kb on + strand at 14.754 kb on + strand at 14.766 kb on + strand at 14.822 kb on + strand at 14.905 kb on - strand at 14.936 kb on + strand at 14.981 kb on - strand, within nifK at 15.033 kb on + strand, within nifK at 15.128 kb on - strand, within nifK at 15.130 kb on + strand, within nifK at 15.138 kb on + strand, within nifK at 15.166 kb on - strand, within nifK at 15.249 kb on + strand, within nifK at 15.336 kb on - strand, within nifK at 15.338 kb on + strand, within nifK at 15.348 kb on - strand, within nifK at 15.450 kb on - strand, within nifK at 15.533 kb on - strand, within nifK at 15.553 kb on - strand, within nifK at 15.565 kb on + strand, within nifK at 15.583 kb on + strand, within nifK at 15.593 kb on + strand, within nifK at 15.601 kb on - strand, within nifK
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Nitrite as (N) remove 13,363 - nifE DVUA0009 0.82 -0.2 13,367 - nifE DVUA0009 0.82 -0.2 13,369 + nifE DVUA0009 0.83 +0.8 13,369 + nifE DVUA0009 0.83 -0.3 13,374 + nifE DVUA0009 0.83 -1.7 13,374 + nifE DVUA0009 0.83 +1.7 13,374 + nifE DVUA0009 0.83 -0.2 13,377 - nifE DVUA0009 0.83 -0.3 13,382 - nifE DVUA0009 0.83 +0.8 13,394 + nifE DVUA0009 0.84 -0.4 13,411 + nifE DVUA0009 0.85 -0.5 13,428 + nifE DVUA0009 0.86 -1.7 13,466 + nifE DVUA0009 0.88 -0.2 13,466 + nifE DVUA0009 0.88 +0.2 13,468 + nifE DVUA0009 0.88 -0.1 13,471 - nifE DVUA0009 0.89 +0.1 13,474 - nifE DVUA0009 0.89 -0.8 13,474 - nifE DVUA0009 0.89 +1.0 13,513 - +0.0 13,566 - -0.2 13,581 - -1.6 13,733 + -0.4 13,774 + +0.0 13,819 + -0.0 13,826 + -0.0 13,863 - -0.1 13,900 + +0.6 13,939 + +2.0 13,944 + +1.4 13,947 - -0.1 13,947 - +1.4 13,947 - -0.2 13,958 + +0.7 14,001 + -0.1 14,023 + -0.5 14,045 - +0.2 14,069 + -0.3 14,069 + -0.2 14,077 - -0.3 14,077 - -0.5 14,082 - +0.1 14,082 - +0.1 14,082 - -1.0 14,106 + -0.0 14,109 - -0.1 14,325 - -0.1 14,330 - +0.1 14,509 - DVUA0010 0.66 -1.5 14,600 + -0.3 14,619 + -0.7 14,659 - +4.0 14,665 + +0.0 14,720 - +1.0 14,732 + -0.1 14,754 + -0.3 14,766 + -0.4 14,822 + +0.4 14,905 - -0.5 14,936 + -0.3 14,981 - nifK DVUA0011 0.13 +0.4 15,033 + nifK DVUA0011 0.17 +0.1 15,128 - nifK DVUA0011 0.24 -0.5 15,130 + nifK DVUA0011 0.24 -0.5 15,138 + nifK DVUA0011 0.24 -0.5 15,166 - nifK DVUA0011 0.26 -0.7 15,249 + nifK DVUA0011 0.32 -0.3 15,336 - nifK DVUA0011 0.39 +0.3 15,338 + nifK DVUA0011 0.39 +1.0 15,348 - nifK DVUA0011 0.39 -0.1 15,450 - nifK DVUA0011 0.47 +0.5 15,533 - nifK DVUA0011 0.53 +0.3 15,553 - nifK DVUA0011 0.54 +0.3 15,565 + nifK DVUA0011 0.55 -0.2 15,583 + nifK DVUA0011 0.56 -0.4 15,593 + nifK DVUA0011 0.57 +0.5 15,601 - nifK DVUA0011 0.58 +0.4
Or see this region's nucleotide sequence