Experiment: MoLS4 with Nitrite as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt polA and DVU0497 are separated by 106 nucleotides DVU0497 and DVU0498 are separated by 78 nucleotides DVU0498 and DVU0499 are separated by 229 nucleotides DVU0499 and selB are separated by 349 nucleotides
DVU0496: polA - DNA polymerase I (TIGR), at 565,280 to 568,327
polA
DVU0497: DVU0497 - hypothetical protein (TIGR), at 568,434 to 568,682
DVU0497
DVU0498: DVU0498 - iron-sulfur cluster-binding protein, putative (TIGR), at 568,761 to 570,266
DVU0498
DVU0499: DVU0499 - conserved hypothetical protein TIGR00149 (TIGR), at 570,496 to 570,891
DVU0499
DVU0500: selB - selenocysteine-specific translation elongation factor (TIGR), at 571,241 to 573,169
selB
Position (kb) 568
569
570
571 Strain fitness (log2 ratio) -2
-1
0
1
2 at 568.409 kb on - strand at 568.419 kb on - strand at 568.487 kb on - strand, within DVU0497 at 568.493 kb on - strand, within DVU0497 at 568.550 kb on - strand, within DVU0497 at 568.614 kb on + strand, within DVU0497 at 568.615 kb on + strand, within DVU0497 at 568.622 kb on + strand, within DVU0497 at 568.622 kb on - strand, within DVU0497 at 568.656 kb on - strand, within DVU0497 at 568.663 kb on + strand at 568.671 kb on - strand at 568.721 kb on + strand at 568.774 kb on - strand at 568.790 kb on + strand at 568.877 kb on + strand at 568.885 kb on - strand at 568.928 kb on + strand, within DVU0498 at 568.935 kb on + strand, within DVU0498 at 568.943 kb on + strand, within DVU0498 at 569.006 kb on + strand, within DVU0498 at 569.025 kb on - strand, within DVU0498 at 569.036 kb on + strand, within DVU0498 at 569.051 kb on - strand, within DVU0498 at 569.206 kb on + strand, within DVU0498 at 569.233 kb on - strand, within DVU0498 at 569.241 kb on + strand, within DVU0498 at 569.249 kb on - strand, within DVU0498 at 569.297 kb on - strand, within DVU0498 at 569.343 kb on - strand, within DVU0498 at 569.349 kb on + strand, within DVU0498 at 569.393 kb on + strand, within DVU0498 at 569.395 kb on - strand, within DVU0498 at 569.401 kb on - strand, within DVU0498 at 569.401 kb on - strand, within DVU0498 at 569.436 kb on - strand, within DVU0498 at 569.495 kb on - strand, within DVU0498 at 569.708 kb on - strand, within DVU0498 at 569.872 kb on - strand, within DVU0498 at 569.911 kb on + strand, within DVU0498 at 569.973 kb on - strand, within DVU0498 at 569.995 kb on + strand, within DVU0498 at 570.003 kb on + strand, within DVU0498 at 570.032 kb on + strand, within DVU0498 at 570.090 kb on + strand, within DVU0498 at 570.090 kb on + strand, within DVU0498 at 570.096 kb on + strand, within DVU0498 at 570.152 kb on + strand at 570.168 kb on + strand at 570.289 kb on + strand at 570.310 kb on + strand at 570.392 kb on - strand at 570.398 kb on - strand at 570.412 kb on + strand at 570.412 kb on + strand at 570.420 kb on - strand at 570.423 kb on + strand at 570.425 kb on - strand at 570.561 kb on - strand, within DVU0499 at 570.572 kb on + strand, within DVU0499 at 570.720 kb on - strand, within DVU0499 at 570.866 kb on + strand at 570.874 kb on - strand at 570.876 kb on + strand at 570.942 kb on - strand at 570.945 kb on - strand at 570.951 kb on + strand at 570.969 kb on - strand at 570.981 kb on - strand at 571.118 kb on + strand at 571.228 kb on - strand at 571.235 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Nitrite as (N) remove 568,409 - +0.4 568,419 - -2.5 568,487 - DVU0497 0.21 +0.4 568,493 - DVU0497 0.24 +0.2 568,550 - DVU0497 0.47 +0.0 568,614 + DVU0497 0.72 +0.2 568,615 + DVU0497 0.73 -0.4 568,622 + DVU0497 0.76 -0.8 568,622 - DVU0497 0.76 +0.1 568,656 - DVU0497 0.89 +0.2 568,663 + -0.4 568,671 - -0.8 568,721 + -0.1 568,774 - +0.1 568,790 + +0.6 568,877 + -0.7 568,885 - -0.1 568,928 + DVU0498 0.11 +0.2 568,935 + DVU0498 0.12 -1.6 568,943 + DVU0498 0.12 +0.3 569,006 + DVU0498 0.16 +0.1 569,025 - DVU0498 0.18 -0.5 569,036 + DVU0498 0.18 -0.4 569,051 - DVU0498 0.19 -0.1 569,206 + DVU0498 0.30 -0.4 569,233 - DVU0498 0.31 -2.1 569,241 + DVU0498 0.32 +0.3 569,249 - DVU0498 0.32 +1.0 569,297 - DVU0498 0.36 +1.8 569,343 - DVU0498 0.39 +0.4 569,349 + DVU0498 0.39 -0.0 569,393 + DVU0498 0.42 +0.5 569,395 - DVU0498 0.42 +0.2 569,401 - DVU0498 0.42 +0.0 569,401 - DVU0498 0.42 +1.4 569,436 - DVU0498 0.45 +0.1 569,495 - DVU0498 0.49 +0.3 569,708 - DVU0498 0.63 -0.5 569,872 - DVU0498 0.74 +0.3 569,911 + DVU0498 0.76 -1.3 569,973 - DVU0498 0.80 -0.6 569,995 + DVU0498 0.82 +0.1 570,003 + DVU0498 0.82 -1.9 570,032 + DVU0498 0.84 -0.6 570,090 + DVU0498 0.88 -0.2 570,090 + DVU0498 0.88 +0.2 570,096 + DVU0498 0.89 +0.8 570,152 + -0.2 570,168 + -0.2 570,289 + -0.7 570,310 + -2.1 570,392 - -0.4 570,398 - -0.2 570,412 + +0.7 570,412 + -0.1 570,420 - +0.1 570,423 + -0.1 570,425 - -0.2 570,561 - DVU0499 0.16 -0.1 570,572 + DVU0499 0.19 +0.2 570,720 - DVU0499 0.57 +0.1 570,866 + -1.0 570,874 - -0.2 570,876 + -0.2 570,942 - -0.7 570,945 - -0.2 570,951 + +0.3 570,969 - -0.2 570,981 - +0.2 571,118 + +0.5 571,228 - +0.4 571,235 - +0.4
Or see this region's nucleotide sequence