Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2861

Experiment: MoLS4 with Nitrite as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2859 and DVU2860 are separated by 3 nucleotidesDVU2860 and DVU2861 overlap by 17 nucleotidesDVU2861 and DVU2862 overlap by 4 nucleotidesDVU2862 and DVU2863 overlap by 4 nucleotidesDVU2863 and DVU2864 are separated by 2 nucleotides DVU2859: DVU2859 - tail sheath protein, putative (TIGR), at 2,958,791 to 2,960,254 DVU2859 DVU2860: DVU2860 - conserved hypothetical protein (TIGR), at 2,960,258 to 2,960,449 DVU2860 DVU2861: DVU2861 - hypothetical protein (TIGR), at 2,960,433 to 2,960,990 DVU2861 DVU2862: DVU2862 - hypothetical protein (TIGR), at 2,960,987 to 2,961,313 DVU2862 DVU2863: DVU2863 - hypothetical protein (TIGR), at 2,961,310 to 2,961,903 DVU2863 DVU2864: DVU2864 - hypothetical protein (TIGR), at 2,961,906 to 2,962,049 DVU2864 Position (kb) 2960 2961Strain fitness (log2 ratio) -2 -1 0 1 2at 2959.453 kb on + strand, within DVU2859at 2959.930 kb on + strand, within DVU2859at 2959.933 kb on - strand, within DVU2859at 2959.988 kb on + strand, within DVU2859at 2960.030 kb on - strand, within DVU2859at 2960.703 kb on + strand, within DVU2861at 2960.925 kb on - strand, within DVU2861at 2960.925 kb on - strand, within DVU2861at 2961.473 kb on - strand, within DVU2863at 2961.473 kb on - strand, within DVU2863at 2961.978 kb on + strand, within DVU2864at 2961.978 kb on + strand, within DVU2864

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Nitrite as (N)
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2,959,453 + DVU2859 0.45 -0.3
2,959,930 + DVU2859 0.78 +0.4
2,959,933 - DVU2859 0.78 +0.2
2,959,988 + DVU2859 0.82 -0.2
2,960,030 - DVU2859 0.85 +0.1
2,960,703 + DVU2861 0.48 -1.1
2,960,925 - DVU2861 0.88 +0.1
2,960,925 - DVU2861 0.88 -2.0
2,961,473 - DVU2863 0.27 +0.1
2,961,473 - DVU2863 0.27 +2.0
2,961,978 + DVU2864 0.50 -1.6
2,961,978 + DVU2864 0.50 -0.5

Or see this region's nucleotide sequence