Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1817

Experiment: MoLS4 with Nitrite as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1816 and cyf are separated by 441 nucleotidescyf and secF are separated by 151 nucleotides DVU1816: DVU1816 - conserved hypothetical protein (TIGR), at 1,880,550 to 1,881,305 DVU1816 DVU1817: cyf - cytochrome c-553 (TIGR), at 1,881,747 to 1,882,058 cyf DVU1818: secF - protein-export membrane protein SecF (TIGR), at 1,882,210 to 1,883,298 secF Position (kb) 1881 1882 1883Strain fitness (log2 ratio) -2 -1 0 1at 1880.846 kb on + strand, within DVU1816at 1880.854 kb on - strand, within DVU1816at 1880.887 kb on + strand, within DVU1816at 1880.900 kb on - strand, within DVU1816at 1881.029 kb on - strand, within DVU1816at 1881.039 kb on - strand, within DVU1816at 1881.076 kb on - strand, within DVU1816at 1881.331 kb on - strandat 1881.407 kb on - strandat 1881.479 kb on + strandat 1881.640 kb on - strandat 1881.823 kb on + strand, within cyfat 1881.909 kb on + strand, within cyfat 1881.943 kb on - strand, within cyfat 1882.009 kb on - strand, within cyfat 1882.101 kb on - strandat 1882.125 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Nitrite as (N)
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1,880,846 + DVU1816 0.39 -0.0
1,880,854 - DVU1816 0.40 +0.2
1,880,887 + DVU1816 0.45 -0.6
1,880,900 - DVU1816 0.46 +0.0
1,881,029 - DVU1816 0.63 -1.8
1,881,039 - DVU1816 0.65 +0.2
1,881,076 - DVU1816 0.70 -0.1
1,881,331 - +0.0
1,881,407 - -0.8
1,881,479 + +0.2
1,881,640 - -0.4
1,881,823 + cyf DVU1817 0.24 -0.2
1,881,909 + cyf DVU1817 0.52 -0.1
1,881,943 - cyf DVU1817 0.63 -0.3
1,882,009 - cyf DVU1817 0.84 -2.3
1,882,101 - -0.2
1,882,125 - -0.7

Or see this region's nucleotide sequence