Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1760

Experiment: MoLS4 with Nitrite as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmopB and DVU1760 are separated by 638 nucleotidesDVU1760 and DVU1762 are separated by 248 nucleotides DVU1759: mopB - molybdenum-binding protein, HTH domain (TIGR), at 1,823,946 to 1,824,314 mopB DVU1760: DVU1760 - transcriptional regulator, TetR family (TIGR), at 1,824,953 to 1,825,537 DVU1760 DVU1762: DVU1762 - membrane protein, putative (TIGR), at 1,825,786 to 1,826,244 DVU1762 Position (kb) 1824 1825 1826Strain fitness (log2 ratio) -2 -1 0 1 2at 1823.953 kb on + strandat 1823.953 kb on + strandat 1823.961 kb on - strandat 1823.972 kb on + strandat 1824.107 kb on - strand, within mopBat 1824.107 kb on - strand, within mopBat 1824.153 kb on + strand, within mopBat 1824.269 kb on + strand, within mopBat 1824.277 kb on - strand, within mopBat 1824.284 kb on + strandat 1824.301 kb on + strandat 1824.507 kb on + strandat 1824.533 kb on + strandat 1824.538 kb on + strandat 1824.584 kb on + strandat 1824.922 kb on - strandat 1824.987 kb on + strandat 1825.017 kb on + strand, within DVU1760at 1825.017 kb on + strand, within DVU1760at 1825.321 kb on + strand, within DVU1760at 1825.475 kb on - strand, within DVU1760at 1825.760 kb on + strandat 1825.845 kb on - strand, within DVU1762at 1825.902 kb on + strand, within DVU1762at 1825.951 kb on + strand, within DVU1762at 1825.959 kb on - strand, within DVU1762at 1825.959 kb on - strand, within DVU1762at 1826.132 kb on - strand, within DVU1762at 1826.396 kb on - strandat 1826.420 kb on + strandat 1826.420 kb on + strandat 1826.428 kb on - strandat 1826.442 kb on + strandat 1826.450 kb on - strandat 1826.451 kb on - strandat 1826.451 kb on - strandat 1826.451 kb on - strandat 1826.504 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Nitrite as (N)
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1,823,953 + -0.4
1,823,953 + -1.1
1,823,961 - -0.4
1,823,972 + -0.0
1,824,107 - mopB DVU1759 0.44 -0.4
1,824,107 - mopB DVU1759 0.44 -0.3
1,824,153 + mopB DVU1759 0.56 -0.7
1,824,269 + mopB DVU1759 0.88 -0.5
1,824,277 - mopB DVU1759 0.90 +0.9
1,824,284 + +0.1
1,824,301 + -0.1
1,824,507 + +0.1
1,824,533 + +0.5
1,824,538 + +0.2
1,824,584 + +0.2
1,824,922 - +0.2
1,824,987 + +0.1
1,825,017 + DVU1760 0.11 -1.1
1,825,017 + DVU1760 0.11 -0.5
1,825,321 + DVU1760 0.63 -0.6
1,825,475 - DVU1760 0.89 -0.6
1,825,760 + -0.1
1,825,845 - DVU1762 0.13 -0.0
1,825,902 + DVU1762 0.25 +2.3
1,825,951 + DVU1762 0.36 -1.0
1,825,959 - DVU1762 0.38 +1.2
1,825,959 - DVU1762 0.38 +0.2
1,826,132 - DVU1762 0.75 +2.5
1,826,396 - +1.1
1,826,420 + +0.7
1,826,420 + -1.1
1,826,428 - -1.4
1,826,442 + +0.7
1,826,450 - -0.6
1,826,451 - -2.0
1,826,451 - -0.5
1,826,451 - -0.2
1,826,504 - -0.7

Or see this region's nucleotide sequence