Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.916.1

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.914.1 and Xcc-8004.915.1 are separated by 110 nucleotidesXcc-8004.915.1 and Xcc-8004.916.1 are separated by 88 nucleotidesXcc-8004.916.1 and Xcc-8004.917.1 are separated by 80 nucleotides Xcc-8004.914.1: Xcc-8004.914.1 - tail-specific protease, at 857,115 to 859,298 Xcc-8004.914.1 Xcc-8004.915.1: Xcc-8004.915.1 - membrane protein, putative, at 859,409 to 860,152 Xcc-8004.915.1 Xcc-8004.916.1: Xcc-8004.916.1 - transcriptional regulator, at 860,241 to 861,146 Xcc-8004.916.1 Xcc-8004.917.1: Xcc-8004.917.1 - FIG01209954: hypothetical protein, at 861,227 to 862,093 Xcc-8004.917.1 Position (kb) 860 861 862Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 859.258 kb on + strandat 859.258 kb on + strandat 859.258 kb on + strandat 859.259 kb on - strandat 859.259 kb on - strandat 859.492 kb on + strand, within Xcc-8004.915.1at 859.492 kb on + strand, within Xcc-8004.915.1at 859.493 kb on - strand, within Xcc-8004.915.1at 859.493 kb on - strand, within Xcc-8004.915.1at 859.493 kb on - strand, within Xcc-8004.915.1at 859.493 kb on - strand, within Xcc-8004.915.1at 859.493 kb on - strand, within Xcc-8004.915.1at 859.493 kb on - strand, within Xcc-8004.915.1at 859.550 kb on + strand, within Xcc-8004.915.1at 859.551 kb on - strand, within Xcc-8004.915.1at 859.686 kb on + strand, within Xcc-8004.915.1at 859.821 kb on + strand, within Xcc-8004.915.1at 859.821 kb on + strand, within Xcc-8004.915.1at 859.821 kb on + strand, within Xcc-8004.915.1at 859.821 kb on + strand, within Xcc-8004.915.1at 859.821 kb on + strand, within Xcc-8004.915.1at 859.822 kb on - strand, within Xcc-8004.915.1at 859.822 kb on - strand, within Xcc-8004.915.1at 859.931 kb on + strand, within Xcc-8004.915.1at 859.932 kb on - strand, within Xcc-8004.915.1at 859.932 kb on - strand, within Xcc-8004.915.1at 859.932 kb on - strand, within Xcc-8004.915.1at 859.932 kb on - strand, within Xcc-8004.915.1at 859.932 kb on - strand, within Xcc-8004.915.1at 860.499 kb on + strand, within Xcc-8004.916.1at 860.500 kb on - strand, within Xcc-8004.916.1at 860.500 kb on - strand, within Xcc-8004.916.1at 860.926 kb on + strand, within Xcc-8004.916.1at 860.926 kb on + strand, within Xcc-8004.916.1at 860.926 kb on + strand, within Xcc-8004.916.1at 861.068 kb on + strandat 861.406 kb on + strand, within Xcc-8004.917.1at 861.407 kb on - strand, within Xcc-8004.917.1at 861.453 kb on + strand, within Xcc-8004.917.1at 861.453 kb on + strand, within Xcc-8004.917.1at 861.453 kb on + strand, within Xcc-8004.917.1at 861.453 kb on + strand, within Xcc-8004.917.1at 861.454 kb on - strand, within Xcc-8004.917.1at 861.606 kb on + strand, within Xcc-8004.917.1at 861.606 kb on + strand, within Xcc-8004.917.1at 861.607 kb on - strand, within Xcc-8004.917.1at 861.607 kb on - strand, within Xcc-8004.917.1at 861.607 kb on - strand, within Xcc-8004.917.1at 861.757 kb on - strand, within Xcc-8004.917.1at 861.757 kb on - strand, within Xcc-8004.917.1at 861.816 kb on + strand, within Xcc-8004.917.1at 861.817 kb on - strand, within Xcc-8004.917.1at 861.820 kb on + strand, within Xcc-8004.917.1at 861.820 kb on + strand, within Xcc-8004.917.1at 861.820 kb on + strand, within Xcc-8004.917.1at 861.820 kb on + strand, within Xcc-8004.917.1at 861.821 kb on - strand, within Xcc-8004.917.1at 861.821 kb on - strand, within Xcc-8004.917.1at 861.821 kb on - strand, within Xcc-8004.917.1at 861.821 kb on - strand, within Xcc-8004.917.1at 861.821 kb on - strand, within Xcc-8004.917.1at 861.952 kb on + strand, within Xcc-8004.917.1at 862.129 kb on + strandat 862.129 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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859,258 + +0.0
859,258 + -3.6
859,258 + +2.0
859,259 - -2.2
859,259 - +0.6
859,492 + Xcc-8004.915.1 0.11 -0.9
859,492 + Xcc-8004.915.1 0.11 +0.2
859,493 - Xcc-8004.915.1 0.11 -0.1
859,493 - Xcc-8004.915.1 0.11 +1.7
859,493 - Xcc-8004.915.1 0.11 +0.2
859,493 - Xcc-8004.915.1 0.11 -0.5
859,493 - Xcc-8004.915.1 0.11 +1.7
859,493 - Xcc-8004.915.1 0.11 -0.2
859,550 + Xcc-8004.915.1 0.19 -0.4
859,551 - Xcc-8004.915.1 0.19 -0.4
859,686 + Xcc-8004.915.1 0.37 +0.3
859,821 + Xcc-8004.915.1 0.55 -0.4
859,821 + Xcc-8004.915.1 0.55 -0.6
859,821 + Xcc-8004.915.1 0.55 -0.6
859,821 + Xcc-8004.915.1 0.55 +0.3
859,821 + Xcc-8004.915.1 0.55 -1.9
859,822 - Xcc-8004.915.1 0.56 +1.2
859,822 - Xcc-8004.915.1 0.56 +0.5
859,931 + Xcc-8004.915.1 0.70 +0.8
859,932 - Xcc-8004.915.1 0.70 -0.9
859,932 - Xcc-8004.915.1 0.70 +0.1
859,932 - Xcc-8004.915.1 0.70 +0.1
859,932 - Xcc-8004.915.1 0.70 +0.5
859,932 - Xcc-8004.915.1 0.70 +0.4
860,499 + Xcc-8004.916.1 0.28 -0.5
860,500 - Xcc-8004.916.1 0.29 -0.9
860,500 - Xcc-8004.916.1 0.29 +0.6
860,926 + Xcc-8004.916.1 0.76 -0.6
860,926 + Xcc-8004.916.1 0.76 -1.0
860,926 + Xcc-8004.916.1 0.76 -1.3
861,068 + +0.2
861,406 + Xcc-8004.917.1 0.21 -1.1
861,407 - Xcc-8004.917.1 0.21 -0.1
861,453 + Xcc-8004.917.1 0.26 +0.6
861,453 + Xcc-8004.917.1 0.26 +0.8
861,453 + Xcc-8004.917.1 0.26 +1.1
861,453 + Xcc-8004.917.1 0.26 -2.7
861,454 - Xcc-8004.917.1 0.26 +1.0
861,606 + Xcc-8004.917.1 0.44 -0.4
861,606 + Xcc-8004.917.1 0.44 -0.9
861,607 - Xcc-8004.917.1 0.44 +0.1
861,607 - Xcc-8004.917.1 0.44 -0.5
861,607 - Xcc-8004.917.1 0.44 +0.5
861,757 - Xcc-8004.917.1 0.61 +1.5
861,757 - Xcc-8004.917.1 0.61 +0.3
861,816 + Xcc-8004.917.1 0.68 +0.2
861,817 - Xcc-8004.917.1 0.68 -0.3
861,820 + Xcc-8004.917.1 0.68 +1.9
861,820 + Xcc-8004.917.1 0.68 -0.6
861,820 + Xcc-8004.917.1 0.68 -0.8
861,820 + Xcc-8004.917.1 0.68 -0.1
861,821 - Xcc-8004.917.1 0.69 +0.0
861,821 - Xcc-8004.917.1 0.69 -0.7
861,821 - Xcc-8004.917.1 0.69 -3.3
861,821 - Xcc-8004.917.1 0.69 -0.8
861,821 - Xcc-8004.917.1 0.69 +0.5
861,952 + Xcc-8004.917.1 0.84 +0.2
862,129 + -2.2
862,129 + +0.9

Or see this region's nucleotide sequence