Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.889.1 and Xcc-8004.890.1 are separated by 48 nucleotides Xcc-8004.890.1 and Xcc-8004.891.1 overlap by 7 nucleotides Xcc-8004.891.1 and Xcc-8004.892.1 overlap by 169 nucleotides
Xcc-8004.889.1: Xcc-8004.889.1 - Type IV secretion system protein VirD4, at 836,807 to 837,520
Xcc-8004.889.1
Xcc-8004.890.1: Xcc-8004.890.1 - Mobile element protein, at 837,569 to 837,832
Xcc-8004.890.1
Xcc-8004.891.1: Xcc-8004.891.1 - Mobile element protein, at 837,826 to 838,671
Xcc-8004.891.1
Xcc-8004.892.1: Xcc-8004.892.1 - Coupling protein VirD4, ATPase required for T-DNA transfer, at 838,503 to 839,714
Xcc-8004.892.1
Position (kb) 837
838 Strain fitness (log2 ratio) -2
-1
0
1 at 836.713 kb on - strand at 836.713 kb on - strand at 836.747 kb on + strand at 836.764 kb on + strand at 836.764 kb on + strand at 836.816 kb on - strand at 836.816 kb on - strand at 836.946 kb on - strand, within Xcc-8004.889.1 at 837.013 kb on - strand, within Xcc-8004.889.1 at 837.013 kb on - strand, within Xcc-8004.889.1 at 837.013 kb on - strand, within Xcc-8004.889.1 at 837.422 kb on + strand, within Xcc-8004.889.1 at 837.422 kb on + strand, within Xcc-8004.889.1 at 837.423 kb on - strand, within Xcc-8004.889.1 at 837.423 kb on - strand, within Xcc-8004.889.1 at 837.423 kb on - strand, within Xcc-8004.889.1 at 837.424 kb on + strand, within Xcc-8004.889.1 at 837.425 kb on - strand, within Xcc-8004.889.1 at 838.669 kb on + strand at 838.754 kb on + strand, within Xcc-8004.892.1 at 838.761 kb on + strand, within Xcc-8004.892.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 836,713 - -0.2 836,713 - -1.2 836,747 + -0.3 836,764 + -0.6 836,764 + +1.0 836,816 - +0.1 836,816 - +0.5 836,946 - Xcc-8004.889.1 0.19 -0.2 837,013 - Xcc-8004.889.1 0.29 +0.3 837,013 - Xcc-8004.889.1 0.29 -1.1 837,013 - Xcc-8004.889.1 0.29 +0.0 837,422 + Xcc-8004.889.1 0.86 +0.0 837,422 + Xcc-8004.889.1 0.86 -1.7 837,423 - Xcc-8004.889.1 0.86 -0.4 837,423 - Xcc-8004.889.1 0.86 +0.8 837,423 - Xcc-8004.889.1 0.86 -0.9 837,424 + Xcc-8004.889.1 0.86 +0.4 837,425 - Xcc-8004.889.1 0.87 -2.0 838,669 + +1.2 838,754 + Xcc-8004.892.1 0.21 +1.2 838,761 + Xcc-8004.892.1 0.21 -1.9
Or see this region's nucleotide sequence