Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.875.1

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.874.1 and Xcc-8004.875.1 are separated by 301 nucleotidesXcc-8004.875.1 and Xcc-8004.876.1 overlap by 53 nucleotidesXcc-8004.876.1 and Xcc-8004.877.1 are separated by 387 nucleotides Xcc-8004.874.1: Xcc-8004.874.1 - S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284), at 822,281 to 824,665 Xcc-8004.874.1 Xcc-8004.875.1: Xcc-8004.875.1 - Mobile element protein, at 824,967 to 825,437 Xcc-8004.875.1 Xcc-8004.876.1: Xcc-8004.876.1 - Mobile element protein, at 825,385 to 825,771 Xcc-8004.876.1 Xcc-8004.877.1: Xcc-8004.877.1 - hypothetical protein, at 826,159 to 828,201 Xcc-8004.877.1 Position (kb) 824 825 826Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 824.076 kb on - strand, within Xcc-8004.874.1at 824.102 kb on + strand, within Xcc-8004.874.1at 824.168 kb on + strand, within Xcc-8004.874.1at 824.322 kb on + strand, within Xcc-8004.874.1at 824.407 kb on + strand, within Xcc-8004.874.1at 824.517 kb on - strandat 824.525 kb on + strandat 824.525 kb on + strandat 824.525 kb on + strandat 824.636 kb on + strandat 824.696 kb on - strandat 824.953 kb on - strandat 824.957 kb on - strandat 824.957 kb on - strandat 824.957 kb on - strandat 825.421 kb on - strandat 825.633 kb on - strand, within Xcc-8004.876.1at 825.633 kb on - strand, within Xcc-8004.876.1at 826.067 kb on + strandat 826.067 kb on + strandat 826.085 kb on + strandat 826.086 kb on - strandat 826.203 kb on + strandat 826.204 kb on - strandat 826.204 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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824,076 - Xcc-8004.874.1 0.75 -0.8
824,102 + Xcc-8004.874.1 0.76 -3.3
824,168 + Xcc-8004.874.1 0.79 +1.7
824,322 + Xcc-8004.874.1 0.86 +0.4
824,407 + Xcc-8004.874.1 0.89 +0.1
824,517 - -0.9
824,525 + +1.0
824,525 + -0.8
824,525 + -1.2
824,636 + +2.7
824,696 - -1.5
824,953 - -2.3
824,957 - -0.5
824,957 - -1.0
824,957 - -2.7
825,421 - +0.3
825,633 - Xcc-8004.876.1 0.64 +1.5
825,633 - Xcc-8004.876.1 0.64 +1.2
826,067 + -1.6
826,067 + -0.4
826,085 + +1.1
826,086 - +1.2
826,203 + +0.5
826,204 - -0.7
826,204 - -2.0

Or see this region's nucleotide sequence