Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.583.1 and Xcc-8004.584.1 are separated by 114 nucleotides Xcc-8004.584.1 and Xcc-8004.585.1 overlap by 4 nucleotides Xcc-8004.585.1 and Xcc-8004.586.1 overlap by 4 nucleotides Xcc-8004.586.1 and Xcc-8004.587.1 overlap by 4 nucleotides
Xcc-8004.583.1: Xcc-8004.583.1 - serine/threonine protein kinase, at 540,983 to 541,633
Xcc-8004.583.1
Xcc-8004.584.1: Xcc-8004.584.1 - Na(+) H(+) antiporter subunit G, at 541,748 to 542,170
Xcc-8004.584.1
Xcc-8004.585.1: Xcc-8004.585.1 - Na(+) H(+) antiporter subunit F, at 542,167 to 542,451
Xcc-8004.585.1
Xcc-8004.586.1: Xcc-8004.586.1 - Na(+) H(+) antiporter subunit E, at 542,448 to 542,954
Xcc-8004.586.1
Xcc-8004.587.1: Xcc-8004.587.1 - Na(+) H(+) antiporter subunit D, at 542,951 to 544,510
Xcc-8004.587.1
Position (kb) 542
543 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 541.272 kb on + strand, within Xcc-8004.583.1 at 541.272 kb on + strand, within Xcc-8004.583.1 at 541.272 kb on + strand, within Xcc-8004.583.1 at 541.273 kb on - strand, within Xcc-8004.583.1 at 541.273 kb on - strand, within Xcc-8004.583.1 at 541.273 kb on - strand, within Xcc-8004.583.1 at 541.273 kb on - strand, within Xcc-8004.583.1 at 541.304 kb on + strand, within Xcc-8004.583.1 at 541.304 kb on + strand, within Xcc-8004.583.1 at 541.304 kb on + strand, within Xcc-8004.583.1 at 541.305 kb on - strand, within Xcc-8004.583.1 at 541.305 kb on - strand, within Xcc-8004.583.1 at 541.379 kb on + strand, within Xcc-8004.583.1 at 541.380 kb on - strand, within Xcc-8004.583.1 at 541.457 kb on + strand, within Xcc-8004.583.1 at 541.490 kb on + strand, within Xcc-8004.583.1 at 541.490 kb on + strand, within Xcc-8004.583.1 at 541.490 kb on + strand, within Xcc-8004.583.1 at 541.490 kb on + strand, within Xcc-8004.583.1 at 541.490 kb on + strand, within Xcc-8004.583.1 at 541.490 kb on + strand, within Xcc-8004.583.1 at 541.490 kb on + strand, within Xcc-8004.583.1 at 541.490 kb on + strand, within Xcc-8004.583.1 at 541.490 kb on + strand, within Xcc-8004.583.1 at 541.490 kb on + strand, within Xcc-8004.583.1 at 541.491 kb on - strand, within Xcc-8004.583.1 at 541.491 kb on - strand, within Xcc-8004.583.1 at 541.491 kb on - strand, within Xcc-8004.583.1 at 541.491 kb on - strand, within Xcc-8004.583.1 at 541.613 kb on + strand at 541.613 kb on + strand at 541.613 kb on + strand at 541.613 kb on + strand at 541.614 kb on - strand at 541.614 kb on - strand at 541.689 kb on + strand at 541.689 kb on + strand at 541.690 kb on - strand at 541.690 kb on - strand at 541.690 kb on - strand at 542.196 kb on - strand, within Xcc-8004.585.1 at 542.196 kb on - strand, within Xcc-8004.585.1 at 542.196 kb on - strand, within Xcc-8004.585.1 at 542.440 kb on - strand at 542.440 kb on - strand at 542.440 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 541,272 + Xcc-8004.583.1 0.44 -2.1 541,272 + Xcc-8004.583.1 0.44 +0.5 541,272 + Xcc-8004.583.1 0.44 +0.9 541,273 - Xcc-8004.583.1 0.45 -1.2 541,273 - Xcc-8004.583.1 0.45 +0.7 541,273 - Xcc-8004.583.1 0.45 +0.9 541,273 - Xcc-8004.583.1 0.45 -0.9 541,304 + Xcc-8004.583.1 0.49 -1.7 541,304 + Xcc-8004.583.1 0.49 +0.4 541,304 + Xcc-8004.583.1 0.49 +0.3 541,305 - Xcc-8004.583.1 0.49 +0.3 541,305 - Xcc-8004.583.1 0.49 +0.1 541,379 + Xcc-8004.583.1 0.61 -0.1 541,380 - Xcc-8004.583.1 0.61 +0.0 541,457 + Xcc-8004.583.1 0.73 +1.0 541,490 + Xcc-8004.583.1 0.78 -0.8 541,490 + Xcc-8004.583.1 0.78 -0.3 541,490 + Xcc-8004.583.1 0.78 +0.3 541,490 + Xcc-8004.583.1 0.78 +1.7 541,490 + Xcc-8004.583.1 0.78 -0.2 541,490 + Xcc-8004.583.1 0.78 -0.7 541,490 + Xcc-8004.583.1 0.78 +0.9 541,490 + Xcc-8004.583.1 0.78 +0.7 541,490 + Xcc-8004.583.1 0.78 +0.2 541,490 + Xcc-8004.583.1 0.78 +0.8 541,491 - Xcc-8004.583.1 0.78 -2.6 541,491 - Xcc-8004.583.1 0.78 -0.6 541,491 - Xcc-8004.583.1 0.78 -0.6 541,491 - Xcc-8004.583.1 0.78 +0.8 541,613 + +0.7 541,613 + +0.3 541,613 + +1.0 541,613 + -1.4 541,614 - +1.3 541,614 - -0.6 541,689 + -0.8 541,689 + -0.5 541,690 - -0.1 541,690 - +1.4 541,690 - -0.2 542,196 - Xcc-8004.585.1 0.10 -1.2 542,196 - Xcc-8004.585.1 0.10 -2.8 542,196 - Xcc-8004.585.1 0.10 -1.8 542,440 - +0.4 542,440 - +2.4 542,440 - -2.3
Or see this region's nucleotide sequence