Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.53.1

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.52.1 and Xcc-8004.53.1 are separated by 299 nucleotidesXcc-8004.53.1 and Xcc-8004.54.1 overlap by 4 nucleotidesXcc-8004.54.1 and Xcc-8004.55.1 are separated by 134 nucleotides Xcc-8004.52.1: Xcc-8004.52.1 - transcriptional regulator lysR family, at 50,747 to 51,640 Xcc-8004.52.1 Xcc-8004.53.1: Xcc-8004.53.1 - hypothetical protein, at 51,940 to 52,245 Xcc-8004.53.1 Xcc-8004.54.1: Xcc-8004.54.1 - ThiJ/PfpI family protein, at 52,242 to 52,919 Xcc-8004.54.1 Xcc-8004.55.1: Xcc-8004.55.1 - transcriptional regulator, at 53,054 to 53,944 Xcc-8004.55.1 Position (kb) 51 52 53Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 50.957 kb on + strand, within Xcc-8004.52.1at 50.957 kb on + strand, within Xcc-8004.52.1at 50.958 kb on - strand, within Xcc-8004.52.1at 50.958 kb on - strand, within Xcc-8004.52.1at 50.958 kb on - strand, within Xcc-8004.52.1at 50.971 kb on + strand, within Xcc-8004.52.1at 50.971 kb on + strand, within Xcc-8004.52.1at 50.972 kb on - strand, within Xcc-8004.52.1at 50.972 kb on - strand, within Xcc-8004.52.1at 51.026 kb on + strand, within Xcc-8004.52.1at 51.026 kb on + strand, within Xcc-8004.52.1at 51.026 kb on + strand, within Xcc-8004.52.1at 51.026 kb on + strand, within Xcc-8004.52.1at 51.026 kb on + strand, within Xcc-8004.52.1at 51.027 kb on - strand, within Xcc-8004.52.1at 51.027 kb on - strand, within Xcc-8004.52.1at 51.127 kb on - strand, within Xcc-8004.52.1at 51.183 kb on + strand, within Xcc-8004.52.1at 51.183 kb on + strand, within Xcc-8004.52.1at 51.183 kb on + strand, within Xcc-8004.52.1at 51.183 kb on + strand, within Xcc-8004.52.1at 51.184 kb on - strand, within Xcc-8004.52.1at 51.184 kb on - strand, within Xcc-8004.52.1at 51.184 kb on - strand, within Xcc-8004.52.1at 51.184 kb on - strand, within Xcc-8004.52.1at 51.444 kb on + strand, within Xcc-8004.52.1at 51.445 kb on - strand, within Xcc-8004.52.1at 51.445 kb on - strand, within Xcc-8004.52.1at 51.547 kb on + strand, within Xcc-8004.52.1at 51.547 kb on + strand, within Xcc-8004.52.1at 51.596 kb on - strandat 51.612 kb on + strandat 51.612 kb on + strandat 51.612 kb on + strandat 51.612 kb on + strandat 51.612 kb on + strandat 51.612 kb on + strandat 51.612 kb on + strandat 51.613 kb on - strandat 51.613 kb on - strandat 51.613 kb on - strandat 51.674 kb on + strandat 51.674 kb on + strandat 51.785 kb on + strandat 51.785 kb on + strandat 51.785 kb on + strandat 51.785 kb on + strandat 51.785 kb on + strandat 51.786 kb on - strandat 51.791 kb on + strandat 51.791 kb on + strandat 51.792 kb on - strandat 51.830 kb on - strandat 51.893 kb on + strandat 51.894 kb on - strandat 52.016 kb on + strand, within Xcc-8004.53.1at 52.016 kb on + strand, within Xcc-8004.53.1at 52.017 kb on - strand, within Xcc-8004.53.1at 52.017 kb on - strand, within Xcc-8004.53.1at 52.115 kb on + strand, within Xcc-8004.53.1at 52.177 kb on + strand, within Xcc-8004.53.1at 52.177 kb on + strand, within Xcc-8004.53.1at 52.177 kb on + strand, within Xcc-8004.53.1at 52.178 kb on - strand, within Xcc-8004.53.1at 52.178 kb on - strand, within Xcc-8004.53.1at 52.366 kb on + strand, within Xcc-8004.54.1at 52.366 kb on + strand, within Xcc-8004.54.1at 52.366 kb on + strand, within Xcc-8004.54.1at 52.367 kb on - strand, within Xcc-8004.54.1at 52.367 kb on - strand, within Xcc-8004.54.1at 52.367 kb on - strand, within Xcc-8004.54.1at 52.427 kb on - strand, within Xcc-8004.54.1at 52.645 kb on + strand, within Xcc-8004.54.1at 52.646 kb on - strand, within Xcc-8004.54.1at 52.680 kb on - strand, within Xcc-8004.54.1at 52.680 kb on - strand, within Xcc-8004.54.1at 52.744 kb on + strand, within Xcc-8004.54.1at 52.846 kb on + strand, within Xcc-8004.54.1at 52.971 kb on + strandat 52.971 kb on + strandat 52.971 kb on + strandat 52.971 kb on + strandat 52.971 kb on + strandat 52.971 kb on + strandat 52.971 kb on + strandat 52.971 kb on + strandat 52.971 kb on + strandat 52.971 kb on + strandat 52.971 kb on + strandat 52.971 kb on + strandat 52.971 kb on + strandat 52.971 kb on + strandat 52.971 kb on + strandat 52.972 kb on - strandat 52.972 kb on - strandat 52.972 kb on - strandat 52.972 kb on - strandat 52.972 kb on - strandat 52.972 kb on - strandat 52.972 kb on - strandat 52.972 kb on - strandat 52.972 kb on - strandat 52.972 kb on - strandat 52.972 kb on - strandat 52.994 kb on + strandat 52.994 kb on + strandat 52.995 kb on - strandat 52.995 kb on - strandat 52.995 kb on - strandat 53.210 kb on + strand, within Xcc-8004.55.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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50,957 + Xcc-8004.52.1 0.23 -0.7
50,957 + Xcc-8004.52.1 0.23 -0.9
50,958 - Xcc-8004.52.1 0.24 +2.7
50,958 - Xcc-8004.52.1 0.24 -1.7
50,958 - Xcc-8004.52.1 0.24 -0.0
50,971 + Xcc-8004.52.1 0.25 -2.4
50,971 + Xcc-8004.52.1 0.25 -0.1
50,972 - Xcc-8004.52.1 0.25 +1.0
50,972 - Xcc-8004.52.1 0.25 +1.8
51,026 + Xcc-8004.52.1 0.31 +2.3
51,026 + Xcc-8004.52.1 0.31 -0.3
51,026 + Xcc-8004.52.1 0.31 -1.2
51,026 + Xcc-8004.52.1 0.31 +0.2
51,026 + Xcc-8004.52.1 0.31 -1.7
51,027 - Xcc-8004.52.1 0.31 -1.1
51,027 - Xcc-8004.52.1 0.31 -0.6
51,127 - Xcc-8004.52.1 0.43 -0.6
51,183 + Xcc-8004.52.1 0.49 -0.9
51,183 + Xcc-8004.52.1 0.49 -3.1
51,183 + Xcc-8004.52.1 0.49 +0.1
51,183 + Xcc-8004.52.1 0.49 +0.3
51,184 - Xcc-8004.52.1 0.49 +0.6
51,184 - Xcc-8004.52.1 0.49 -2.1
51,184 - Xcc-8004.52.1 0.49 -1.2
51,184 - Xcc-8004.52.1 0.49 -2.3
51,444 + Xcc-8004.52.1 0.78 +1.2
51,445 - Xcc-8004.52.1 0.78 +0.2
51,445 - Xcc-8004.52.1 0.78 +0.6
51,547 + Xcc-8004.52.1 0.89 -0.4
51,547 + Xcc-8004.52.1 0.89 -0.2
51,596 - -0.3
51,612 + -2.1
51,612 + -1.2
51,612 + +1.5
51,612 + +0.0
51,612 + +1.4
51,612 + +0.5
51,612 + -0.5
51,613 - +1.1
51,613 - +0.7
51,613 - +0.2
51,674 + -2.3
51,674 + -1.6
51,785 + +0.0
51,785 + -1.4
51,785 + +0.8
51,785 + -0.5
51,785 + +1.8
51,786 - -1.1
51,791 + +1.0
51,791 + -1.3
51,792 - -1.5
51,830 - -1.4
51,893 + -0.3
51,894 - -1.4
52,016 + Xcc-8004.53.1 0.25 -1.5
52,016 + Xcc-8004.53.1 0.25 +0.6
52,017 - Xcc-8004.53.1 0.25 -1.7
52,017 - Xcc-8004.53.1 0.25 +0.2
52,115 + Xcc-8004.53.1 0.57 +0.2
52,177 + Xcc-8004.53.1 0.77 -2.4
52,177 + Xcc-8004.53.1 0.77 +1.3
52,177 + Xcc-8004.53.1 0.77 -2.1
52,178 - Xcc-8004.53.1 0.78 -1.4
52,178 - Xcc-8004.53.1 0.78 -0.8
52,366 + Xcc-8004.54.1 0.18 -0.6
52,366 + Xcc-8004.54.1 0.18 +0.5
52,366 + Xcc-8004.54.1 0.18 +1.1
52,367 - Xcc-8004.54.1 0.18 -1.2
52,367 - Xcc-8004.54.1 0.18 -0.1
52,367 - Xcc-8004.54.1 0.18 +0.1
52,427 - Xcc-8004.54.1 0.27 +2.6
52,645 + Xcc-8004.54.1 0.59 +0.7
52,646 - Xcc-8004.54.1 0.60 +1.5
52,680 - Xcc-8004.54.1 0.65 -2.8
52,680 - Xcc-8004.54.1 0.65 -0.3
52,744 + Xcc-8004.54.1 0.74 -1.6
52,846 + Xcc-8004.54.1 0.89 -1.2
52,971 + -0.6
52,971 + +0.3
52,971 + +0.8
52,971 + -0.1
52,971 + -0.8
52,971 + +1.4
52,971 + +1.3
52,971 + +5.0
52,971 + -1.0
52,971 + +1.1
52,971 + -0.7
52,971 + +0.9
52,971 + -1.2
52,971 + +0.3
52,971 + +0.6
52,972 - -0.3
52,972 - -2.5
52,972 - +1.6
52,972 - -0.1
52,972 - -1.2
52,972 - +0.4
52,972 - -0.6
52,972 - -0.8
52,972 - -1.1
52,972 - -0.3
52,972 - -3.1
52,994 + -1.9
52,994 + +1.2
52,995 - -0.8
52,995 - +0.9
52,995 - +1.8
53,210 + Xcc-8004.55.1 0.18 -0.6

Or see this region's nucleotide sequence