Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4395.1 and Xcc-8004.4396.1 overlap by 4 nucleotides Xcc-8004.4396.1 and Xcc-8004.4397.1 overlap by 4 nucleotides Xcc-8004.4397.1 and Xcc-8004.4398.1 are separated by 101 nucleotides
Xcc-8004.4395.1: Xcc-8004.4395.1 - Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193), at 4,204,370 to 4,205,464
Xcc-8004.4395.1
Xcc-8004.4396.1: Xcc-8004.4396.1 - N-acetylglutamate synthase (EC 2.3.1.1), at 4,205,461 to 4,205,943
Xcc-8004.4396.1
Xcc-8004.4397.1: Xcc-8004.4397.1 - Ribonucleotide reductase transcriptional regulator NrdR, at 4,205,940 to 4,206,464
Xcc-8004.4397.1
Xcc-8004.4398.1: Xcc-8004.4398.1 - Serine hydroxymethyltransferase (EC 2.1.2.1), at 4,206,566 to 4,207,819
Xcc-8004.4398.1
Position (kb) 4205
4206 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 4205.470 kb on + strand at 4205.494 kb on + strand at 4205.494 kb on + strand at 4205.494 kb on + strand at 4205.495 kb on - strand at 4205.495 kb on - strand at 4205.555 kb on + strand, within Xcc-8004.4396.1 at 4205.579 kb on + strand, within Xcc-8004.4396.1 at 4205.579 kb on + strand, within Xcc-8004.4396.1 at 4205.579 kb on + strand, within Xcc-8004.4396.1 at 4205.580 kb on - strand, within Xcc-8004.4396.1 at 4205.580 kb on - strand, within Xcc-8004.4396.1 at 4205.585 kb on + strand, within Xcc-8004.4396.1 at 4205.585 kb on + strand, within Xcc-8004.4396.1 at 4205.585 kb on + strand, within Xcc-8004.4396.1 at 4205.585 kb on + strand, within Xcc-8004.4396.1 at 4205.585 kb on + strand, within Xcc-8004.4396.1 at 4205.585 kb on + strand, within Xcc-8004.4396.1 at 4205.585 kb on + strand, within Xcc-8004.4396.1 at 4205.585 kb on + strand, within Xcc-8004.4396.1 at 4205.585 kb on + strand, within Xcc-8004.4396.1 at 4205.585 kb on + strand, within Xcc-8004.4396.1 at 4205.585 kb on + strand, within Xcc-8004.4396.1 at 4205.585 kb on + strand, within Xcc-8004.4396.1 at 4205.585 kb on + strand, within Xcc-8004.4396.1 at 4205.586 kb on - strand, within Xcc-8004.4396.1 at 4205.586 kb on - strand, within Xcc-8004.4396.1 at 4205.586 kb on - strand, within Xcc-8004.4396.1 at 4205.586 kb on - strand, within Xcc-8004.4396.1 at 4205.586 kb on - strand, within Xcc-8004.4396.1 at 4205.586 kb on - strand, within Xcc-8004.4396.1 at 4205.586 kb on - strand, within Xcc-8004.4396.1 at 4205.678 kb on + strand, within Xcc-8004.4396.1 at 4205.679 kb on - strand, within Xcc-8004.4396.1 at 4205.679 kb on - strand, within Xcc-8004.4396.1 at 4205.679 kb on - strand, within Xcc-8004.4396.1 at 4206.516 kb on - strand at 4206.532 kb on + strand at 4206.533 kb on - strand at 4206.574 kb on - strand at 4206.574 kb on - strand at 4206.574 kb on - strand at 4206.574 kb on - strand at 4206.574 kb on - strand at 4206.574 kb on - strand at 4206.582 kb on + strand at 4206.582 kb on + strand at 4206.713 kb on - strand, within Xcc-8004.4398.1 at 4206.713 kb on - strand, within Xcc-8004.4398.1 at 4206.901 kb on - strand, within Xcc-8004.4398.1 at 4206.901 kb on - strand, within Xcc-8004.4398.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 4,205,470 + +0.9 4,205,494 + +2.4 4,205,494 + -1.2 4,205,494 + -1.1 4,205,495 - -2.4 4,205,495 - -1.0 4,205,555 + Xcc-8004.4396.1 0.19 -2.1 4,205,579 + Xcc-8004.4396.1 0.24 +0.1 4,205,579 + Xcc-8004.4396.1 0.24 +1.6 4,205,579 + Xcc-8004.4396.1 0.24 -0.2 4,205,580 - Xcc-8004.4396.1 0.25 -0.2 4,205,580 - Xcc-8004.4396.1 0.25 +0.9 4,205,585 + Xcc-8004.4396.1 0.26 +0.7 4,205,585 + Xcc-8004.4396.1 0.26 +0.1 4,205,585 + Xcc-8004.4396.1 0.26 -2.9 4,205,585 + Xcc-8004.4396.1 0.26 +0.4 4,205,585 + Xcc-8004.4396.1 0.26 -0.5 4,205,585 + Xcc-8004.4396.1 0.26 +0.6 4,205,585 + Xcc-8004.4396.1 0.26 -0.1 4,205,585 + Xcc-8004.4396.1 0.26 +0.9 4,205,585 + Xcc-8004.4396.1 0.26 +0.0 4,205,585 + Xcc-8004.4396.1 0.26 +2.4 4,205,585 + Xcc-8004.4396.1 0.26 -0.1 4,205,585 + Xcc-8004.4396.1 0.26 -2.5 4,205,585 + Xcc-8004.4396.1 0.26 +2.4 4,205,586 - Xcc-8004.4396.1 0.26 +0.8 4,205,586 - Xcc-8004.4396.1 0.26 -0.1 4,205,586 - Xcc-8004.4396.1 0.26 -0.5 4,205,586 - Xcc-8004.4396.1 0.26 +0.0 4,205,586 - Xcc-8004.4396.1 0.26 -1.5 4,205,586 - Xcc-8004.4396.1 0.26 +0.3 4,205,586 - Xcc-8004.4396.1 0.26 -0.9 4,205,678 + Xcc-8004.4396.1 0.45 +2.0 4,205,679 - Xcc-8004.4396.1 0.45 +6.5 4,205,679 - Xcc-8004.4396.1 0.45 -1.5 4,205,679 - Xcc-8004.4396.1 0.45 -1.4 4,206,516 - -1.3 4,206,532 + -2.2 4,206,533 - -2.5 4,206,574 - -0.4 4,206,574 - +0.4 4,206,574 - +1.2 4,206,574 - +1.3 4,206,574 - +0.4 4,206,574 - +0.4 4,206,582 + -1.2 4,206,582 + -0.8 4,206,713 - Xcc-8004.4398.1 0.12 +0.9 4,206,713 - Xcc-8004.4398.1 0.12 +1.2 4,206,901 - Xcc-8004.4398.1 0.27 -0.6 4,206,901 - Xcc-8004.4398.1 0.27 -0.5
Or see this region's nucleotide sequence