Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.408.1

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.407.1 and Xcc-8004.408.1 are separated by 136 nucleotidesXcc-8004.408.1 and Xcc-8004.409.1 are separated by 170 nucleotidesXcc-8004.409.1 and Xcc-8004.410.1 are separated by 303 nucleotides Xcc-8004.406.1: Xcc-8004.406.1 - hypothetical protein, at 394,150 to 394,791 Xcc-8004.406.1 Xcc-8004.407.1: Xcc-8004.407.1 - NADPH:quinone oxidoreductase 2, at 394,602 to 395,489 Xcc-8004.407.1 Xcc-8004.408.1: Xcc-8004.408.1 - Redox-sensing transcriptional regulator QorR, putative, at 395,626 to 396,054 Xcc-8004.408.1 Xcc-8004.409.1: Xcc-8004.409.1 - hypothetical protein, at 396,225 to 396,419 Xcc-8004.409.1 Xcc-8004.410.1: Xcc-8004.410.1 - putative; ORF located using Glimmer/Genemark, at 396,723 to 397,223 Xcc-8004.410.1 Position (kb) 395 396 397Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 394.740 kb on + strandat 394.740 kb on + strandat 394.741 kb on - strandat 394.789 kb on + strandat 394.790 kb on - strandat 394.790 kb on - strandat 394.814 kb on - strand, within Xcc-8004.407.1at 394.894 kb on + strand, within Xcc-8004.407.1at 394.894 kb on + strand, within Xcc-8004.407.1at 394.894 kb on + strand, within Xcc-8004.407.1at 394.895 kb on - strand, within Xcc-8004.407.1at 394.895 kb on - strand, within Xcc-8004.407.1at 394.895 kb on - strand, within Xcc-8004.407.1at 394.895 kb on - strand, within Xcc-8004.407.1at 394.895 kb on - strand, within Xcc-8004.407.1at 394.895 kb on - strand, within Xcc-8004.407.1at 394.929 kb on + strand, within Xcc-8004.407.1at 394.952 kb on - strand, within Xcc-8004.407.1at 395.041 kb on + strand, within Xcc-8004.407.1at 395.041 kb on + strand, within Xcc-8004.407.1at 395.041 kb on + strand, within Xcc-8004.407.1at 395.041 kb on + strand, within Xcc-8004.407.1at 395.041 kb on + strand, within Xcc-8004.407.1at 395.041 kb on + strand, within Xcc-8004.407.1at 395.042 kb on - strand, within Xcc-8004.407.1at 395.042 kb on - strand, within Xcc-8004.407.1at 395.042 kb on - strand, within Xcc-8004.407.1at 395.042 kb on - strand, within Xcc-8004.407.1at 395.042 kb on - strand, within Xcc-8004.407.1at 395.053 kb on + strand, within Xcc-8004.407.1at 395.053 kb on + strand, within Xcc-8004.407.1at 395.053 kb on + strand, within Xcc-8004.407.1at 395.053 kb on + strand, within Xcc-8004.407.1at 395.054 kb on - strand, within Xcc-8004.407.1at 395.054 kb on - strand, within Xcc-8004.407.1at 395.171 kb on - strand, within Xcc-8004.407.1at 395.171 kb on - strand, within Xcc-8004.407.1at 395.314 kb on + strand, within Xcc-8004.407.1at 395.315 kb on - strand, within Xcc-8004.407.1at 395.315 kb on - strand, within Xcc-8004.407.1at 395.328 kb on + strand, within Xcc-8004.407.1at 395.328 kb on + strand, within Xcc-8004.407.1at 395.328 kb on + strand, within Xcc-8004.407.1at 395.328 kb on + strand, within Xcc-8004.407.1at 395.328 kb on + strand, within Xcc-8004.407.1at 395.328 kb on + strand, within Xcc-8004.407.1at 395.329 kb on - strand, within Xcc-8004.407.1at 395.329 kb on - strand, within Xcc-8004.407.1at 395.329 kb on - strand, within Xcc-8004.407.1at 395.329 kb on - strand, within Xcc-8004.407.1at 395.329 kb on - strand, within Xcc-8004.407.1at 395.385 kb on + strand, within Xcc-8004.407.1at 395.385 kb on + strand, within Xcc-8004.407.1at 395.385 kb on + strand, within Xcc-8004.407.1at 395.386 kb on - strand, within Xcc-8004.407.1at 395.386 kb on - strand, within Xcc-8004.407.1at 395.386 kb on - strand, within Xcc-8004.407.1at 395.386 kb on - strand, within Xcc-8004.407.1at 395.527 kb on - strandat 395.555 kb on + strandat 395.555 kb on + strandat 395.556 kb on - strandat 395.556 kb on - strandat 395.556 kb on - strandat 395.609 kb on + strandat 395.803 kb on - strand, within Xcc-8004.408.1at 395.803 kb on - strand, within Xcc-8004.408.1at 395.803 kb on - strand, within Xcc-8004.408.1at 395.803 kb on - strand, within Xcc-8004.408.1at 395.803 kb on - strand, within Xcc-8004.408.1at 395.872 kb on + strand, within Xcc-8004.408.1at 395.872 kb on + strand, within Xcc-8004.408.1at 395.899 kb on + strand, within Xcc-8004.408.1at 395.899 kb on + strand, within Xcc-8004.408.1at 395.899 kb on + strand, within Xcc-8004.408.1at 395.899 kb on + strand, within Xcc-8004.408.1at 395.899 kb on + strand, within Xcc-8004.408.1at 395.900 kb on - strand, within Xcc-8004.408.1at 395.900 kb on - strand, within Xcc-8004.408.1at 395.900 kb on - strand, within Xcc-8004.408.1at 395.900 kb on - strand, within Xcc-8004.408.1at 395.900 kb on - strand, within Xcc-8004.408.1at 395.900 kb on - strand, within Xcc-8004.408.1at 395.900 kb on - strand, within Xcc-8004.408.1at 395.900 kb on - strand, within Xcc-8004.408.1at 396.111 kb on + strandat 396.111 kb on + strandat 396.111 kb on + strandat 396.111 kb on + strandat 396.112 kb on - strandat 396.112 kb on - strandat 396.112 kb on - strandat 396.112 kb on - strandat 396.191 kb on + strandat 396.191 kb on + strandat 396.191 kb on + strandat 396.191 kb on + strandat 396.191 kb on + strandat 396.191 kb on + strandat 396.192 kb on - strandat 396.192 kb on - strandat 396.192 kb on - strandat 396.192 kb on - strandat 396.192 kb on - strandat 396.192 kb on - strandat 396.192 kb on - strandat 396.192 kb on - strandat 396.192 kb on - strandat 396.192 kb on - strandat 396.210 kb on - strandat 396.228 kb on + strandat 396.228 kb on + strandat 396.228 kb on + strandat 396.228 kb on + strandat 396.228 kb on + strandat 396.228 kb on + strandat 396.228 kb on + strandat 396.229 kb on - strandat 396.229 kb on - strandat 396.307 kb on - strand, within Xcc-8004.409.1at 396.385 kb on - strand, within Xcc-8004.409.1at 396.385 kb on - strand, within Xcc-8004.409.1at 396.385 kb on - strand, within Xcc-8004.409.1at 396.396 kb on + strand, within Xcc-8004.409.1at 396.440 kb on + strandat 396.440 kb on + strandat 396.440 kb on + strandat 396.440 kb on + strandat 396.440 kb on + strandat 396.441 kb on - strandat 396.558 kb on + strandat 396.558 kb on + strandat 396.649 kb on + strandat 396.730 kb on + strandat 397.041 kb on + strand, within Xcc-8004.410.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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394,740 + +0.9
394,740 + -0.1
394,741 - -0.3
394,789 + +0.0
394,790 - +1.5
394,790 - +1.7
394,814 - Xcc-8004.407.1 0.24 +0.7
394,894 + Xcc-8004.407.1 0.33 -0.8
394,894 + Xcc-8004.407.1 0.33 -0.2
394,894 + Xcc-8004.407.1 0.33 -0.0
394,895 - Xcc-8004.407.1 0.33 +0.3
394,895 - Xcc-8004.407.1 0.33 -1.8
394,895 - Xcc-8004.407.1 0.33 -2.9
394,895 - Xcc-8004.407.1 0.33 -0.7
394,895 - Xcc-8004.407.1 0.33 -2.1
394,895 - Xcc-8004.407.1 0.33 -0.7
394,929 + Xcc-8004.407.1 0.37 +1.4
394,952 - Xcc-8004.407.1 0.39 -0.2
395,041 + Xcc-8004.407.1 0.49 +2.4
395,041 + Xcc-8004.407.1 0.49 +3.2
395,041 + Xcc-8004.407.1 0.49 +0.6
395,041 + Xcc-8004.407.1 0.49 +1.4
395,041 + Xcc-8004.407.1 0.49 -0.4
395,041 + Xcc-8004.407.1 0.49 -2.1
395,042 - Xcc-8004.407.1 0.50 -0.5
395,042 - Xcc-8004.407.1 0.50 -1.1
395,042 - Xcc-8004.407.1 0.50 -1.6
395,042 - Xcc-8004.407.1 0.50 +0.7
395,042 - Xcc-8004.407.1 0.50 +0.5
395,053 + Xcc-8004.407.1 0.51 -0.2
395,053 + Xcc-8004.407.1 0.51 +0.5
395,053 + Xcc-8004.407.1 0.51 -0.8
395,053 + Xcc-8004.407.1 0.51 -1.3
395,054 - Xcc-8004.407.1 0.51 +0.5
395,054 - Xcc-8004.407.1 0.51 -0.7
395,171 - Xcc-8004.407.1 0.64 +2.4
395,171 - Xcc-8004.407.1 0.64 +0.8
395,314 + Xcc-8004.407.1 0.80 -0.4
395,315 - Xcc-8004.407.1 0.80 +0.6
395,315 - Xcc-8004.407.1 0.80 +0.7
395,328 + Xcc-8004.407.1 0.82 +0.7
395,328 + Xcc-8004.407.1 0.82 +0.8
395,328 + Xcc-8004.407.1 0.82 +1.0
395,328 + Xcc-8004.407.1 0.82 -0.6
395,328 + Xcc-8004.407.1 0.82 -0.4
395,328 + Xcc-8004.407.1 0.82 +0.2
395,329 - Xcc-8004.407.1 0.82 -1.0
395,329 - Xcc-8004.407.1 0.82 -0.2
395,329 - Xcc-8004.407.1 0.82 -2.5
395,329 - Xcc-8004.407.1 0.82 -1.0
395,329 - Xcc-8004.407.1 0.82 +0.5
395,385 + Xcc-8004.407.1 0.88 -1.4
395,385 + Xcc-8004.407.1 0.88 +0.3
395,385 + Xcc-8004.407.1 0.88 -0.9
395,386 - Xcc-8004.407.1 0.88 -1.0
395,386 - Xcc-8004.407.1 0.88 -0.7
395,386 - Xcc-8004.407.1 0.88 +0.8
395,386 - Xcc-8004.407.1 0.88 +0.2
395,527 - +1.3
395,555 + -3.5
395,555 + +1.7
395,556 - +1.8
395,556 - -1.4
395,556 - -0.4
395,609 + -0.1
395,803 - Xcc-8004.408.1 0.41 +0.4
395,803 - Xcc-8004.408.1 0.41 -0.0
395,803 - Xcc-8004.408.1 0.41 -0.1
395,803 - Xcc-8004.408.1 0.41 +1.8
395,803 - Xcc-8004.408.1 0.41 +0.6
395,872 + Xcc-8004.408.1 0.57 -0.2
395,872 + Xcc-8004.408.1 0.57 -0.5
395,899 + Xcc-8004.408.1 0.64 -0.6
395,899 + Xcc-8004.408.1 0.64 +0.1
395,899 + Xcc-8004.408.1 0.64 -1.4
395,899 + Xcc-8004.408.1 0.64 +1.2
395,899 + Xcc-8004.408.1 0.64 -0.1
395,900 - Xcc-8004.408.1 0.64 -0.6
395,900 - Xcc-8004.408.1 0.64 -1.3
395,900 - Xcc-8004.408.1 0.64 -0.6
395,900 - Xcc-8004.408.1 0.64 -0.7
395,900 - Xcc-8004.408.1 0.64 -2.2
395,900 - Xcc-8004.408.1 0.64 -0.3
395,900 - Xcc-8004.408.1 0.64 -1.0
395,900 - Xcc-8004.408.1 0.64 -1.1
396,111 + -2.2
396,111 + +0.5
396,111 + +0.6
396,111 + +0.4
396,112 - +0.0
396,112 - +0.7
396,112 - -1.0
396,112 - +1.1
396,191 + +2.0
396,191 + -0.2
396,191 + -0.7
396,191 + +0.5
396,191 + +2.5
396,191 + -1.4
396,192 - -0.3
396,192 - -0.6
396,192 - -0.3
396,192 - -2.3
396,192 - -2.1
396,192 - -0.1
396,192 - -2.0
396,192 - -0.1
396,192 - -0.5
396,192 - -1.0
396,210 - +0.6
396,228 + -0.2
396,228 + +0.8
396,228 + -3.4
396,228 + +0.7
396,228 + -1.8
396,228 + +1.8
396,228 + -1.0
396,229 - +0.8
396,229 - -3.3
396,307 - Xcc-8004.409.1 0.42 -0.7
396,385 - Xcc-8004.409.1 0.82 -2.5
396,385 - Xcc-8004.409.1 0.82 -1.1
396,385 - Xcc-8004.409.1 0.82 -2.9
396,396 + Xcc-8004.409.1 0.88 +0.1
396,440 + -2.7
396,440 + +0.8
396,440 + -0.7
396,440 + -0.2
396,440 + +0.6
396,441 - +0.7
396,558 + -1.3
396,558 + -0.8
396,649 + +0.1
396,730 + +0.0
397,041 + Xcc-8004.410.1 0.63 -0.1

Or see this region's nucleotide sequence