Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3903.1 and Xcc-8004.3904.1 are separated by 108 nucleotides Xcc-8004.3904.1 and Xcc-8004.3905.1 overlap by 4 nucleotides Xcc-8004.3905.1 and Xcc-8004.3906.1 overlap by 4 nucleotides
Xcc-8004.3903.1: Xcc-8004.3903.1 - Mlr6856 protein, at 3,771,775 to 3,773,106
Xcc-8004.3903.1
Xcc-8004.3904.1: Xcc-8004.3904.1 - hypothetical protein, at 3,773,215 to 3,773,388
Xcc-8004.3904.1
Xcc-8004.3905.1: Xcc-8004.3905.1 - Periplasmic aromatic aldehyde oxidoreductase, iron-sulfur subunit YagT, at 3,773,385 to 3,773,963
Xcc-8004.3905.1
Xcc-8004.3906.1: Xcc-8004.3906.1 - Periplasmic aromatic aldehyde oxidoreductase, FAD binding subunit YagS, at 3,773,960 to 3,775,024
Xcc-8004.3906.1
Position (kb) 3773
3774 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3772.453 kb on + strand, within Xcc-8004.3903.1 at 3772.454 kb on - strand, within Xcc-8004.3903.1 at 3772.587 kb on - strand, within Xcc-8004.3903.1 at 3772.674 kb on - strand, within Xcc-8004.3903.1 at 3772.674 kb on - strand, within Xcc-8004.3903.1 at 3772.988 kb on + strand at 3772.988 kb on + strand at 3772.989 kb on - strand at 3772.989 kb on - strand at 3772.989 kb on - strand at 3772.989 kb on - strand at 3772.989 kb on - strand at 3772.989 kb on - strand at 3772.989 kb on - strand at 3773.319 kb on + strand, within Xcc-8004.3904.1 at 3773.319 kb on + strand, within Xcc-8004.3904.1 at 3773.319 kb on + strand, within Xcc-8004.3904.1 at 3773.319 kb on + strand, within Xcc-8004.3904.1 at 3773.320 kb on - strand, within Xcc-8004.3904.1 at 3773.320 kb on - strand, within Xcc-8004.3904.1 at 3773.484 kb on + strand, within Xcc-8004.3905.1 at 3773.485 kb on - strand, within Xcc-8004.3905.1 at 3773.631 kb on - strand, within Xcc-8004.3905.1 at 3773.748 kb on + strand, within Xcc-8004.3905.1 at 3773.893 kb on + strand, within Xcc-8004.3905.1 at 3773.893 kb on + strand, within Xcc-8004.3905.1 at 3773.975 kb on + strand at 3773.975 kb on + strand at 3773.975 kb on + strand at 3773.976 kb on - strand at 3773.976 kb on - strand at 3774.064 kb on - strand at 3774.351 kb on - strand, within Xcc-8004.3906.1 at 3774.429 kb on - strand, within Xcc-8004.3906.1 at 3774.429 kb on - strand, within Xcc-8004.3906.1 at 3774.452 kb on - strand, within Xcc-8004.3906.1 at 3774.667 kb on + strand, within Xcc-8004.3906.1 at 3774.668 kb on - strand, within Xcc-8004.3906.1 at 3774.675 kb on - strand, within Xcc-8004.3906.1 at 3774.675 kb on - strand, within Xcc-8004.3906.1 at 3774.831 kb on + strand, within Xcc-8004.3906.1 at 3774.831 kb on + strand, within Xcc-8004.3906.1 at 3774.832 kb on - strand, within Xcc-8004.3906.1 at 3774.832 kb on - strand, within Xcc-8004.3906.1 at 3774.832 kb on - strand, within Xcc-8004.3906.1 at 3774.886 kb on - strand, within Xcc-8004.3906.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 3,772,453 + Xcc-8004.3903.1 0.51 +0.6 3,772,454 - Xcc-8004.3903.1 0.51 +0.0 3,772,587 - Xcc-8004.3903.1 0.61 +0.1 3,772,674 - Xcc-8004.3903.1 0.67 -2.1 3,772,674 - Xcc-8004.3903.1 0.67 +0.1 3,772,988 + -0.9 3,772,988 + +0.2 3,772,989 - -2.8 3,772,989 - -0.1 3,772,989 - +0.5 3,772,989 - +1.0 3,772,989 - +2.6 3,772,989 - +0.4 3,772,989 - +3.4 3,773,319 + Xcc-8004.3904.1 0.60 +0.8 3,773,319 + Xcc-8004.3904.1 0.60 +1.0 3,773,319 + Xcc-8004.3904.1 0.60 +0.3 3,773,319 + Xcc-8004.3904.1 0.60 +0.9 3,773,320 - Xcc-8004.3904.1 0.60 -2.3 3,773,320 - Xcc-8004.3904.1 0.60 -1.1 3,773,484 + Xcc-8004.3905.1 0.17 -0.3 3,773,485 - Xcc-8004.3905.1 0.17 -0.1 3,773,631 - Xcc-8004.3905.1 0.42 -0.8 3,773,748 + Xcc-8004.3905.1 0.63 -0.3 3,773,893 + Xcc-8004.3905.1 0.88 -1.3 3,773,893 + Xcc-8004.3905.1 0.88 -2.9 3,773,975 + -1.5 3,773,975 + +2.0 3,773,975 + +1.4 3,773,976 - +0.7 3,773,976 - +0.0 3,774,064 - +0.5 3,774,351 - Xcc-8004.3906.1 0.37 +0.1 3,774,429 - Xcc-8004.3906.1 0.44 -0.1 3,774,429 - Xcc-8004.3906.1 0.44 +2.0 3,774,452 - Xcc-8004.3906.1 0.46 +0.6 3,774,667 + Xcc-8004.3906.1 0.66 +0.2 3,774,668 - Xcc-8004.3906.1 0.66 -0.3 3,774,675 - Xcc-8004.3906.1 0.67 -1.1 3,774,675 - Xcc-8004.3906.1 0.67 -0.4 3,774,831 + Xcc-8004.3906.1 0.82 +0.3 3,774,831 + Xcc-8004.3906.1 0.82 +0.4 3,774,832 - Xcc-8004.3906.1 0.82 +0.3 3,774,832 - Xcc-8004.3906.1 0.82 +0.3 3,774,832 - Xcc-8004.3906.1 0.82 -0.7 3,774,886 - Xcc-8004.3906.1 0.87 +0.3
Or see this region's nucleotide sequence