Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3813.1 and Xcc-8004.3814.1 are separated by 155 nucleotides Xcc-8004.3814.1 and Xcc-8004.3815.1 overlap by 1 nucleotides Xcc-8004.3815.1 and Xcc-8004.3816.1 are separated by 2 nucleotides
Xcc-8004.3813.1: Xcc-8004.3813.1 - PDZ domain family protein, at 3,688,932 to 3,690,812
Xcc-8004.3813.1
Xcc-8004.3814.1: Xcc-8004.3814.1 - Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-), at 3,690,968 to 3,691,303
Xcc-8004.3814.1
Xcc-8004.3815.1: Xcc-8004.3815.1 - Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-), at 3,691,303 to 3,691,932
Xcc-8004.3815.1
Xcc-8004.3816.1: Xcc-8004.3816.1 - Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-), at 3,691,935 to 3,693,935
Xcc-8004.3816.1
Position (kb) 3690
3691
3692 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3690.025 kb on + strand, within Xcc-8004.3813.1 at 3690.025 kb on + strand, within Xcc-8004.3813.1 at 3690.049 kb on + strand, within Xcc-8004.3813.1 at 3690.184 kb on + strand, within Xcc-8004.3813.1 at 3690.184 kb on + strand, within Xcc-8004.3813.1 at 3690.184 kb on + strand, within Xcc-8004.3813.1 at 3690.185 kb on - strand, within Xcc-8004.3813.1 at 3690.185 kb on - strand, within Xcc-8004.3813.1 at 3690.185 kb on - strand, within Xcc-8004.3813.1 at 3690.185 kb on - strand, within Xcc-8004.3813.1 at 3690.185 kb on - strand, within Xcc-8004.3813.1 at 3690.188 kb on - strand, within Xcc-8004.3813.1 at 3690.289 kb on + strand, within Xcc-8004.3813.1 at 3690.289 kb on + strand, within Xcc-8004.3813.1 at 3690.290 kb on - strand, within Xcc-8004.3813.1 at 3690.290 kb on - strand, within Xcc-8004.3813.1 at 3690.499 kb on + strand, within Xcc-8004.3813.1 at 3690.616 kb on + strand, within Xcc-8004.3813.1 at 3690.616 kb on + strand, within Xcc-8004.3813.1 at 3690.617 kb on - strand, within Xcc-8004.3813.1 at 3690.853 kb on + strand at 3690.853 kb on + strand at 3690.853 kb on + strand at 3690.854 kb on - strand at 3690.854 kb on - strand at 3690.854 kb on - strand at 3690.878 kb on + strand at 3690.879 kb on - strand at 3691.104 kb on + strand, within Xcc-8004.3814.1 at 3691.105 kb on - strand, within Xcc-8004.3814.1 at 3691.105 kb on - strand, within Xcc-8004.3814.1 at 3691.304 kb on + strand at 3691.323 kb on - strand at 3691.522 kb on - strand, within Xcc-8004.3815.1 at 3691.680 kb on + strand, within Xcc-8004.3815.1 at 3691.681 kb on - strand, within Xcc-8004.3815.1 at 3691.779 kb on - strand, within Xcc-8004.3815.1 at 3691.779 kb on - strand, within Xcc-8004.3815.1 at 3691.823 kb on + strand, within Xcc-8004.3815.1 at 3691.823 kb on + strand, within Xcc-8004.3815.1 at 3692.030 kb on - strand at 3692.155 kb on + strand, within Xcc-8004.3816.1 at 3692.287 kb on + strand, within Xcc-8004.3816.1 at 3692.288 kb on - strand, within Xcc-8004.3816.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 3,690,025 + Xcc-8004.3813.1 0.58 +0.7 3,690,025 + Xcc-8004.3813.1 0.58 +0.0 3,690,049 + Xcc-8004.3813.1 0.59 -1.9 3,690,184 + Xcc-8004.3813.1 0.67 +0.3 3,690,184 + Xcc-8004.3813.1 0.67 -0.3 3,690,184 + Xcc-8004.3813.1 0.67 +0.1 3,690,185 - Xcc-8004.3813.1 0.67 +0.0 3,690,185 - Xcc-8004.3813.1 0.67 +0.4 3,690,185 - Xcc-8004.3813.1 0.67 -1.1 3,690,185 - Xcc-8004.3813.1 0.67 -0.0 3,690,185 - Xcc-8004.3813.1 0.67 -1.5 3,690,188 - Xcc-8004.3813.1 0.67 +1.2 3,690,289 + Xcc-8004.3813.1 0.72 +1.0 3,690,289 + Xcc-8004.3813.1 0.72 -0.2 3,690,290 - Xcc-8004.3813.1 0.72 +0.8 3,690,290 - Xcc-8004.3813.1 0.72 -0.2 3,690,499 + Xcc-8004.3813.1 0.83 -0.1 3,690,616 + Xcc-8004.3813.1 0.90 -0.0 3,690,616 + Xcc-8004.3813.1 0.90 +0.4 3,690,617 - Xcc-8004.3813.1 0.90 +1.0 3,690,853 + -1.1 3,690,853 + +0.5 3,690,853 + -0.0 3,690,854 - -0.4 3,690,854 - -1.3 3,690,854 - -0.6 3,690,878 + +1.1 3,690,879 - +0.7 3,691,104 + Xcc-8004.3814.1 0.40 +0.9 3,691,105 - Xcc-8004.3814.1 0.41 -1.6 3,691,105 - Xcc-8004.3814.1 0.41 -3.1 3,691,304 + +1.0 3,691,323 - +0.8 3,691,522 - Xcc-8004.3815.1 0.35 +0.5 3,691,680 + Xcc-8004.3815.1 0.60 -1.5 3,691,681 - Xcc-8004.3815.1 0.60 -1.8 3,691,779 - Xcc-8004.3815.1 0.76 -2.7 3,691,779 - Xcc-8004.3815.1 0.76 -2.9 3,691,823 + Xcc-8004.3815.1 0.83 -0.5 3,691,823 + Xcc-8004.3815.1 0.83 -1.4 3,692,030 - +0.5 3,692,155 + Xcc-8004.3816.1 0.11 -1.8 3,692,287 + Xcc-8004.3816.1 0.18 -0.8 3,692,288 - Xcc-8004.3816.1 0.18 -1.2
Or see this region's nucleotide sequence