Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3710.1

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3708.1 and Xcc-8004.3710.1 overlap by 11 nucleotidesXcc-8004.3710.1 and Xcc-8004.3712.1 overlap by 472 nucleotidesXcc-8004.3712.1 and Xcc-8004.3713.1 overlap by 50 nucleotides Xcc-8004.3708.1: Xcc-8004.3708.1 - hypothetical protein, at 3,591,896 to 3,592,813 Xcc-8004.3708.1 Xcc-8004.3710.1: Xcc-8004.3710.1 - hypothetical protein, at 3,592,803 to 3,593,480 Xcc-8004.3710.1 Xcc-8004.3712.1: Xcc-8004.3712.1 - IS1404 transposase, at 3,593,009 to 3,593,551 Xcc-8004.3712.1 Xcc-8004.3713.1: Xcc-8004.3713.1 - putative; ORF located using Glimmer/Genemark, at 3,593,502 to 3,595,070 Xcc-8004.3713.1 Position (kb) 3592 3593 3594Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3591.822 kb on + strandat 3591.847 kb on + strandat 3591.993 kb on - strand, within Xcc-8004.3708.1at 3592.047 kb on + strand, within Xcc-8004.3708.1at 3592.048 kb on - strand, within Xcc-8004.3708.1at 3592.107 kb on - strand, within Xcc-8004.3708.1at 3592.107 kb on - strand, within Xcc-8004.3708.1at 3592.113 kb on + strand, within Xcc-8004.3708.1at 3592.114 kb on - strand, within Xcc-8004.3708.1at 3592.118 kb on + strand, within Xcc-8004.3708.1at 3592.118 kb on + strand, within Xcc-8004.3708.1at 3592.118 kb on + strand, within Xcc-8004.3708.1at 3592.119 kb on - strand, within Xcc-8004.3708.1at 3592.119 kb on - strand, within Xcc-8004.3708.1at 3592.119 kb on - strand, within Xcc-8004.3708.1at 3592.119 kb on - strand, within Xcc-8004.3708.1at 3592.119 kb on - strand, within Xcc-8004.3708.1at 3592.152 kb on - strand, within Xcc-8004.3708.1at 3592.152 kb on - strand, within Xcc-8004.3708.1at 3592.202 kb on + strand, within Xcc-8004.3708.1at 3592.202 kb on + strand, within Xcc-8004.3708.1at 3592.203 kb on - strand, within Xcc-8004.3708.1at 3592.204 kb on + strand, within Xcc-8004.3708.1at 3592.240 kb on - strand, within Xcc-8004.3708.1at 3592.244 kb on + strand, within Xcc-8004.3708.1at 3592.244 kb on + strand, within Xcc-8004.3708.1at 3592.244 kb on + strand, within Xcc-8004.3708.1at 3592.244 kb on + strand, within Xcc-8004.3708.1at 3592.245 kb on - strand, within Xcc-8004.3708.1at 3592.245 kb on - strand, within Xcc-8004.3708.1at 3592.285 kb on + strand, within Xcc-8004.3708.1at 3592.285 kb on + strand, within Xcc-8004.3708.1at 3592.286 kb on - strand, within Xcc-8004.3708.1at 3592.286 kb on - strand, within Xcc-8004.3708.1at 3592.286 kb on - strand, within Xcc-8004.3708.1at 3592.286 kb on - strand, within Xcc-8004.3708.1at 3592.286 kb on - strand, within Xcc-8004.3708.1at 3592.286 kb on - strand, within Xcc-8004.3708.1at 3592.286 kb on - strand, within Xcc-8004.3708.1at 3592.320 kb on + strand, within Xcc-8004.3708.1at 3592.355 kb on + strand, within Xcc-8004.3708.1at 3592.356 kb on - strand, within Xcc-8004.3708.1at 3592.356 kb on - strand, within Xcc-8004.3708.1at 3592.356 kb on - strand, within Xcc-8004.3708.1at 3592.356 kb on - strand, within Xcc-8004.3708.1at 3592.356 kb on - strand, within Xcc-8004.3708.1at 3592.402 kb on + strand, within Xcc-8004.3708.1at 3592.467 kb on + strand, within Xcc-8004.3708.1at 3592.480 kb on + strand, within Xcc-8004.3708.1at 3592.480 kb on + strand, within Xcc-8004.3708.1at 3592.548 kb on + strand, within Xcc-8004.3708.1at 3592.548 kb on + strand, within Xcc-8004.3708.1at 3592.548 kb on + strand, within Xcc-8004.3708.1at 3592.549 kb on - strand, within Xcc-8004.3708.1at 3592.549 kb on - strand, within Xcc-8004.3708.1at 3592.549 kb on - strand, within Xcc-8004.3708.1at 3592.581 kb on - strand, within Xcc-8004.3708.1at 3592.581 kb on - strand, within Xcc-8004.3708.1at 3592.634 kb on - strand, within Xcc-8004.3708.1at 3592.634 kb on - strand, within Xcc-8004.3708.1at 3592.704 kb on - strand, within Xcc-8004.3708.1at 3592.704 kb on - strand, within Xcc-8004.3708.1at 3592.744 kb on + strandat 3592.745 kb on - strandat 3592.745 kb on - strandat 3592.748 kb on + strandat 3592.804 kb on + strandat 3592.811 kb on + strandat 3592.812 kb on - strandat 3592.875 kb on - strand, within Xcc-8004.3710.1at 3592.941 kb on - strand, within Xcc-8004.3710.1at 3592.997 kb on + strand, within Xcc-8004.3710.1at 3593.045 kb on - strandat 3593.229 kb on - strandat 3593.248 kb on + strandat 3593.354 kb on + strandat 3593.354 kb on + strandat 3593.355 kb on - strandat 3593.376 kb on - strandat 3593.382 kb on + strandat 3593.527 kb on + strandat 3593.527 kb on + strandat 3593.528 kb on - strandat 3593.528 kb on - strandat 3593.561 kb on + strandat 3593.562 kb on - strandat 3593.562 kb on - strandat 3593.562 kb on - strandat 3593.582 kb on + strandat 3593.773 kb on + strand, within Xcc-8004.3713.1at 3593.773 kb on + strand, within Xcc-8004.3713.1at 3593.773 kb on + strand, within Xcc-8004.3713.1at 3593.773 kb on + strand, within Xcc-8004.3713.1at 3593.833 kb on + strand, within Xcc-8004.3713.1at 3593.833 kb on + strand, within Xcc-8004.3713.1at 3593.834 kb on - strand, within Xcc-8004.3713.1at 3593.834 kb on - strand, within Xcc-8004.3713.1at 3593.834 kb on - strand, within Xcc-8004.3713.1at 3593.834 kb on - strand, within Xcc-8004.3713.1at 3594.133 kb on + strand, within Xcc-8004.3713.1at 3594.134 kb on - strand, within Xcc-8004.3713.1at 3594.163 kb on - strand, within Xcc-8004.3713.1at 3594.245 kb on - strand, within Xcc-8004.3713.1at 3594.270 kb on + strand, within Xcc-8004.3713.1at 3594.271 kb on - strand, within Xcc-8004.3713.1at 3594.271 kb on - strand, within Xcc-8004.3713.1at 3594.364 kb on + strand, within Xcc-8004.3713.1at 3594.364 kb on + strand, within Xcc-8004.3713.1at 3594.365 kb on - strand, within Xcc-8004.3713.1at 3594.365 kb on - strand, within Xcc-8004.3713.1at 3594.365 kb on - strand, within Xcc-8004.3713.1at 3594.365 kb on - strand, within Xcc-8004.3713.1at 3594.435 kb on + strand, within Xcc-8004.3713.1at 3594.435 kb on + strand, within Xcc-8004.3713.1at 3594.435 kb on + strand, within Xcc-8004.3713.1at 3594.436 kb on - strand, within Xcc-8004.3713.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,591,822 + +0.3
3,591,847 + -0.7
3,591,993 - Xcc-8004.3708.1 0.11 +0.8
3,592,047 + Xcc-8004.3708.1 0.16 +1.2
3,592,048 - Xcc-8004.3708.1 0.17 -0.8
3,592,107 - Xcc-8004.3708.1 0.23 +2.5
3,592,107 - Xcc-8004.3708.1 0.23 +0.5
3,592,113 + Xcc-8004.3708.1 0.24 -0.3
3,592,114 - Xcc-8004.3708.1 0.24 +0.4
3,592,118 + Xcc-8004.3708.1 0.24 -0.4
3,592,118 + Xcc-8004.3708.1 0.24 -0.8
3,592,118 + Xcc-8004.3708.1 0.24 -0.7
3,592,119 - Xcc-8004.3708.1 0.24 -0.6
3,592,119 - Xcc-8004.3708.1 0.24 +0.2
3,592,119 - Xcc-8004.3708.1 0.24 +0.3
3,592,119 - Xcc-8004.3708.1 0.24 -0.3
3,592,119 - Xcc-8004.3708.1 0.24 -0.2
3,592,152 - Xcc-8004.3708.1 0.28 +2.8
3,592,152 - Xcc-8004.3708.1 0.28 +0.7
3,592,202 + Xcc-8004.3708.1 0.33 -1.4
3,592,202 + Xcc-8004.3708.1 0.33 +0.1
3,592,203 - Xcc-8004.3708.1 0.33 +2.3
3,592,204 + Xcc-8004.3708.1 0.34 -0.3
3,592,240 - Xcc-8004.3708.1 0.37 -1.4
3,592,244 + Xcc-8004.3708.1 0.38 -0.7
3,592,244 + Xcc-8004.3708.1 0.38 -0.9
3,592,244 + Xcc-8004.3708.1 0.38 +0.4
3,592,244 + Xcc-8004.3708.1 0.38 -0.2
3,592,245 - Xcc-8004.3708.1 0.38 -1.4
3,592,245 - Xcc-8004.3708.1 0.38 +0.4
3,592,285 + Xcc-8004.3708.1 0.42 -0.7
3,592,285 + Xcc-8004.3708.1 0.42 -0.7
3,592,286 - Xcc-8004.3708.1 0.42 +0.2
3,592,286 - Xcc-8004.3708.1 0.42 -1.6
3,592,286 - Xcc-8004.3708.1 0.42 -2.7
3,592,286 - Xcc-8004.3708.1 0.42 -1.7
3,592,286 - Xcc-8004.3708.1 0.42 -0.8
3,592,286 - Xcc-8004.3708.1 0.42 +1.4
3,592,286 - Xcc-8004.3708.1 0.42 +0.5
3,592,320 + Xcc-8004.3708.1 0.46 +0.4
3,592,355 + Xcc-8004.3708.1 0.50 +0.9
3,592,356 - Xcc-8004.3708.1 0.50 -0.4
3,592,356 - Xcc-8004.3708.1 0.50 +2.1
3,592,356 - Xcc-8004.3708.1 0.50 +0.4
3,592,356 - Xcc-8004.3708.1 0.50 +1.1
3,592,356 - Xcc-8004.3708.1 0.50 -0.2
3,592,402 + Xcc-8004.3708.1 0.55 -0.1
3,592,467 + Xcc-8004.3708.1 0.62 +0.3
3,592,480 + Xcc-8004.3708.1 0.64 -0.0
3,592,480 + Xcc-8004.3708.1 0.64 -0.5
3,592,548 + Xcc-8004.3708.1 0.71 +0.7
3,592,548 + Xcc-8004.3708.1 0.71 -3.2
3,592,548 + Xcc-8004.3708.1 0.71 +0.1
3,592,549 - Xcc-8004.3708.1 0.71 -0.5
3,592,549 - Xcc-8004.3708.1 0.71 +0.5
3,592,549 - Xcc-8004.3708.1 0.71 -0.4
3,592,581 - Xcc-8004.3708.1 0.75 +0.1
3,592,581 - Xcc-8004.3708.1 0.75 +0.1
3,592,634 - Xcc-8004.3708.1 0.80 -0.7
3,592,634 - Xcc-8004.3708.1 0.80 -1.1
3,592,704 - Xcc-8004.3708.1 0.88 -2.2
3,592,704 - Xcc-8004.3708.1 0.88 +2.0
3,592,744 + -0.8
3,592,745 - -1.5
3,592,745 - +1.6
3,592,748 + +0.7
3,592,804 + +0.2
3,592,811 + -1.2
3,592,812 - +1.9
3,592,875 - Xcc-8004.3710.1 0.11 -1.3
3,592,941 - Xcc-8004.3710.1 0.20 -0.5
3,592,997 + Xcc-8004.3710.1 0.29 +1.2
3,593,045 - +3.1
3,593,229 - -0.6
3,593,248 + +1.6
3,593,354 + -1.1
3,593,354 + +0.3
3,593,355 - -0.5
3,593,376 - -1.3
3,593,382 + +0.5
3,593,527 + -0.3
3,593,527 + -0.7
3,593,528 - -1.4
3,593,528 - +1.3
3,593,561 + +0.5
3,593,562 - -0.2
3,593,562 - +1.4
3,593,562 - +2.1
3,593,582 + -2.2
3,593,773 + Xcc-8004.3713.1 0.17 +0.5
3,593,773 + Xcc-8004.3713.1 0.17 -2.5
3,593,773 + Xcc-8004.3713.1 0.17 +0.0
3,593,773 + Xcc-8004.3713.1 0.17 +1.5
3,593,833 + Xcc-8004.3713.1 0.21 +0.2
3,593,833 + Xcc-8004.3713.1 0.21 +0.3
3,593,834 - Xcc-8004.3713.1 0.21 +0.4
3,593,834 - Xcc-8004.3713.1 0.21 +0.6
3,593,834 - Xcc-8004.3713.1 0.21 +1.2
3,593,834 - Xcc-8004.3713.1 0.21 +2.1
3,594,133 + Xcc-8004.3713.1 0.40 +0.4
3,594,134 - Xcc-8004.3713.1 0.40 -0.4
3,594,163 - Xcc-8004.3713.1 0.42 +0.3
3,594,245 - Xcc-8004.3713.1 0.47 -0.5
3,594,270 + Xcc-8004.3713.1 0.49 -2.3
3,594,271 - Xcc-8004.3713.1 0.49 -1.7
3,594,271 - Xcc-8004.3713.1 0.49 -0.1
3,594,364 + Xcc-8004.3713.1 0.55 +1.2
3,594,364 + Xcc-8004.3713.1 0.55 -0.8
3,594,365 - Xcc-8004.3713.1 0.55 +0.5
3,594,365 - Xcc-8004.3713.1 0.55 -3.4
3,594,365 - Xcc-8004.3713.1 0.55 +3.5
3,594,365 - Xcc-8004.3713.1 0.55 -0.6
3,594,435 + Xcc-8004.3713.1 0.59 -1.0
3,594,435 + Xcc-8004.3713.1 0.59 -0.5
3,594,435 + Xcc-8004.3713.1 0.59 +0.5
3,594,436 - Xcc-8004.3713.1 0.60 +0.3

Or see this region's nucleotide sequence