Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3687.1

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3686.1 and Xcc-8004.3687.1 overlap by 1 nucleotidesXcc-8004.3687.1 and Xcc-8004.3688.1 overlap by 4 nucleotides Xcc-8004.3686.1: Xcc-8004.3686.1 - 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4), at 3,564,693 to 3,565,865 Xcc-8004.3686.1 Xcc-8004.3687.1: Xcc-8004.3687.1 - Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17), at 3,565,865 to 3,566,662 Xcc-8004.3687.1 Xcc-8004.3688.1: Xcc-8004.3688.1 - Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12), at 3,566,659 to 3,567,840 Xcc-8004.3688.1 Position (kb) 3565 3566 3567Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3564.886 kb on + strand, within Xcc-8004.3686.1at 3564.886 kb on + strand, within Xcc-8004.3686.1at 3564.886 kb on + strand, within Xcc-8004.3686.1at 3564.886 kb on + strand, within Xcc-8004.3686.1at 3564.886 kb on + strand, within Xcc-8004.3686.1at 3564.886 kb on + strand, within Xcc-8004.3686.1at 3564.886 kb on + strand, within Xcc-8004.3686.1at 3564.887 kb on - strand, within Xcc-8004.3686.1at 3564.887 kb on - strand, within Xcc-8004.3686.1at 3564.887 kb on - strand, within Xcc-8004.3686.1at 3564.887 kb on - strand, within Xcc-8004.3686.1at 3565.029 kb on + strand, within Xcc-8004.3686.1at 3565.216 kb on + strand, within Xcc-8004.3686.1at 3565.216 kb on + strand, within Xcc-8004.3686.1at 3565.216 kb on + strand, within Xcc-8004.3686.1at 3565.216 kb on + strand, within Xcc-8004.3686.1at 3565.216 kb on + strand, within Xcc-8004.3686.1at 3565.216 kb on + strand, within Xcc-8004.3686.1at 3565.216 kb on + strand, within Xcc-8004.3686.1at 3565.217 kb on - strand, within Xcc-8004.3686.1at 3565.217 kb on - strand, within Xcc-8004.3686.1at 3565.217 kb on - strand, within Xcc-8004.3686.1at 3565.217 kb on - strand, within Xcc-8004.3686.1at 3565.255 kb on + strand, within Xcc-8004.3686.1at 3565.517 kb on - strand, within Xcc-8004.3686.1at 3565.618 kb on + strand, within Xcc-8004.3686.1at 3565.618 kb on + strand, within Xcc-8004.3686.1at 3565.619 kb on - strand, within Xcc-8004.3686.1at 3565.713 kb on + strand, within Xcc-8004.3686.1at 3565.713 kb on + strand, within Xcc-8004.3686.1at 3565.714 kb on - strand, within Xcc-8004.3686.1at 3565.714 kb on - strand, within Xcc-8004.3686.1at 3566.190 kb on - strand, within Xcc-8004.3687.1at 3566.328 kb on + strand, within Xcc-8004.3687.1at 3566.329 kb on - strand, within Xcc-8004.3687.1at 3566.499 kb on + strand, within Xcc-8004.3687.1at 3566.499 kb on + strand, within Xcc-8004.3687.1at 3566.499 kb on + strand, within Xcc-8004.3687.1at 3566.500 kb on - strand, within Xcc-8004.3687.1at 3566.500 kb on - strand, within Xcc-8004.3687.1at 3566.500 kb on - strand, within Xcc-8004.3687.1at 3566.500 kb on - strand, within Xcc-8004.3687.1at 3566.500 kb on - strand, within Xcc-8004.3687.1at 3566.500 kb on - strand, within Xcc-8004.3687.1at 3566.569 kb on + strand, within Xcc-8004.3687.1at 3566.789 kb on + strand, within Xcc-8004.3688.1at 3566.789 kb on + strand, within Xcc-8004.3688.1at 3566.789 kb on + strand, within Xcc-8004.3688.1at 3566.789 kb on + strand, within Xcc-8004.3688.1at 3566.789 kb on + strand, within Xcc-8004.3688.1at 3566.790 kb on - strand, within Xcc-8004.3688.1at 3566.790 kb on - strand, within Xcc-8004.3688.1at 3566.790 kb on - strand, within Xcc-8004.3688.1at 3566.790 kb on - strand, within Xcc-8004.3688.1at 3566.790 kb on - strand, within Xcc-8004.3688.1at 3566.790 kb on - strand, within Xcc-8004.3688.1at 3566.790 kb on - strand, within Xcc-8004.3688.1at 3566.790 kb on - strand, within Xcc-8004.3688.1at 3566.795 kb on + strand, within Xcc-8004.3688.1at 3566.795 kb on + strand, within Xcc-8004.3688.1at 3566.795 kb on + strand, within Xcc-8004.3688.1at 3567.029 kb on + strand, within Xcc-8004.3688.1at 3567.030 kb on - strand, within Xcc-8004.3688.1at 3567.237 kb on - strand, within Xcc-8004.3688.1at 3567.237 kb on - strand, within Xcc-8004.3688.1at 3567.374 kb on + strand, within Xcc-8004.3688.1at 3567.375 kb on - strand, within Xcc-8004.3688.1at 3567.375 kb on - strand, within Xcc-8004.3688.1at 3567.375 kb on - strand, within Xcc-8004.3688.1at 3567.375 kb on - strand, within Xcc-8004.3688.1at 3567.375 kb on - strand, within Xcc-8004.3688.1at 3567.450 kb on - strand, within Xcc-8004.3688.1at 3567.450 kb on - strand, within Xcc-8004.3688.1at 3567.515 kb on + strand, within Xcc-8004.3688.1at 3567.515 kb on + strand, within Xcc-8004.3688.1at 3567.516 kb on - strand, within Xcc-8004.3688.1at 3567.516 kb on - strand, within Xcc-8004.3688.1at 3567.653 kb on + strand, within Xcc-8004.3688.1at 3567.653 kb on + strand, within Xcc-8004.3688.1at 3567.653 kb on + strand, within Xcc-8004.3688.1at 3567.653 kb on + strand, within Xcc-8004.3688.1at 3567.654 kb on - strand, within Xcc-8004.3688.1at 3567.654 kb on - strand, within Xcc-8004.3688.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,564,886 + Xcc-8004.3686.1 0.16 -1.9
3,564,886 + Xcc-8004.3686.1 0.16 -0.1
3,564,886 + Xcc-8004.3686.1 0.16 -2.8
3,564,886 + Xcc-8004.3686.1 0.16 -1.3
3,564,886 + Xcc-8004.3686.1 0.16 +0.1
3,564,886 + Xcc-8004.3686.1 0.16 +1.7
3,564,886 + Xcc-8004.3686.1 0.16 +0.4
3,564,887 - Xcc-8004.3686.1 0.17 -2.8
3,564,887 - Xcc-8004.3686.1 0.17 -2.2
3,564,887 - Xcc-8004.3686.1 0.17 -1.6
3,564,887 - Xcc-8004.3686.1 0.17 +0.4
3,565,029 + Xcc-8004.3686.1 0.29 -0.4
3,565,216 + Xcc-8004.3686.1 0.45 -2.0
3,565,216 + Xcc-8004.3686.1 0.45 -0.7
3,565,216 + Xcc-8004.3686.1 0.45 -2.0
3,565,216 + Xcc-8004.3686.1 0.45 -1.1
3,565,216 + Xcc-8004.3686.1 0.45 -0.4
3,565,216 + Xcc-8004.3686.1 0.45 +0.3
3,565,216 + Xcc-8004.3686.1 0.45 +0.5
3,565,217 - Xcc-8004.3686.1 0.45 -0.7
3,565,217 - Xcc-8004.3686.1 0.45 +0.2
3,565,217 - Xcc-8004.3686.1 0.45 -1.0
3,565,217 - Xcc-8004.3686.1 0.45 -2.0
3,565,255 + Xcc-8004.3686.1 0.48 -0.6
3,565,517 - Xcc-8004.3686.1 0.70 -2.4
3,565,618 + Xcc-8004.3686.1 0.79 +1.9
3,565,618 + Xcc-8004.3686.1 0.79 -2.6
3,565,619 - Xcc-8004.3686.1 0.79 -1.9
3,565,713 + Xcc-8004.3686.1 0.87 +1.3
3,565,713 + Xcc-8004.3686.1 0.87 -0.4
3,565,714 - Xcc-8004.3686.1 0.87 -1.1
3,565,714 - Xcc-8004.3686.1 0.87 -0.1
3,566,190 - Xcc-8004.3687.1 0.41 +0.1
3,566,328 + Xcc-8004.3687.1 0.58 -0.5
3,566,329 - Xcc-8004.3687.1 0.58 -1.1
3,566,499 + Xcc-8004.3687.1 0.79 -0.9
3,566,499 + Xcc-8004.3687.1 0.79 +0.4
3,566,499 + Xcc-8004.3687.1 0.79 -1.4
3,566,500 - Xcc-8004.3687.1 0.80 -1.1
3,566,500 - Xcc-8004.3687.1 0.80 -0.6
3,566,500 - Xcc-8004.3687.1 0.80 -1.9
3,566,500 - Xcc-8004.3687.1 0.80 -3.0
3,566,500 - Xcc-8004.3687.1 0.80 +1.1
3,566,500 - Xcc-8004.3687.1 0.80 -1.0
3,566,569 + Xcc-8004.3687.1 0.88 -0.5
3,566,789 + Xcc-8004.3688.1 0.11 +1.0
3,566,789 + Xcc-8004.3688.1 0.11 +0.3
3,566,789 + Xcc-8004.3688.1 0.11 +0.1
3,566,789 + Xcc-8004.3688.1 0.11 -1.0
3,566,789 + Xcc-8004.3688.1 0.11 -2.2
3,566,790 - Xcc-8004.3688.1 0.11 -1.3
3,566,790 - Xcc-8004.3688.1 0.11 -1.5
3,566,790 - Xcc-8004.3688.1 0.11 -0.4
3,566,790 - Xcc-8004.3688.1 0.11 -1.7
3,566,790 - Xcc-8004.3688.1 0.11 -0.4
3,566,790 - Xcc-8004.3688.1 0.11 -2.3
3,566,790 - Xcc-8004.3688.1 0.11 -1.9
3,566,790 - Xcc-8004.3688.1 0.11 +0.5
3,566,795 + Xcc-8004.3688.1 0.12 +0.2
3,566,795 + Xcc-8004.3688.1 0.12 -1.7
3,566,795 + Xcc-8004.3688.1 0.12 +1.2
3,567,029 + Xcc-8004.3688.1 0.31 -1.9
3,567,030 - Xcc-8004.3688.1 0.31 -2.8
3,567,237 - Xcc-8004.3688.1 0.49 -1.8
3,567,237 - Xcc-8004.3688.1 0.49 -1.6
3,567,374 + Xcc-8004.3688.1 0.60 -0.6
3,567,375 - Xcc-8004.3688.1 0.61 -0.6
3,567,375 - Xcc-8004.3688.1 0.61 -0.4
3,567,375 - Xcc-8004.3688.1 0.61 -0.1
3,567,375 - Xcc-8004.3688.1 0.61 -2.0
3,567,375 - Xcc-8004.3688.1 0.61 -2.1
3,567,450 - Xcc-8004.3688.1 0.67 -2.8
3,567,450 - Xcc-8004.3688.1 0.67 +0.4
3,567,515 + Xcc-8004.3688.1 0.72 +0.9
3,567,515 + Xcc-8004.3688.1 0.72 -0.7
3,567,516 - Xcc-8004.3688.1 0.73 -2.9
3,567,516 - Xcc-8004.3688.1 0.73 -1.3
3,567,653 + Xcc-8004.3688.1 0.84 +4.0
3,567,653 + Xcc-8004.3688.1 0.84 -0.2
3,567,653 + Xcc-8004.3688.1 0.84 -1.6
3,567,653 + Xcc-8004.3688.1 0.84 +0.1
3,567,654 - Xcc-8004.3688.1 0.84 -0.6
3,567,654 - Xcc-8004.3688.1 0.84 -2.6

Or see this region's nucleotide sequence