Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3456.1

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3454.1 and Xcc-8004.3455.1 overlap by 32 nucleotidesXcc-8004.3455.1 and Xcc-8004.3456.1 are separated by 70 nucleotidesXcc-8004.3456.1 and Xcc-8004.3459.1 are separated by 147 nucleotidesXcc-8004.3459.1 and Xcc-8004.3458.1 overlap by 47 nucleotidesXcc-8004.3458.1 and Xcc-8004.3460.1 are separated by 32 nucleotides Xcc-8004.3454.1: Xcc-8004.3454.1 - Phage-related integrase, at 3,342,179 to 3,342,808 Xcc-8004.3454.1 Xcc-8004.3455.1: Xcc-8004.3455.1 - FIG01211546: hypothetical protein, at 3,342,777 to 3,343,469 Xcc-8004.3455.1 Xcc-8004.3456.1: Xcc-8004.3456.1 - FIG01214159: hypothetical protein, at 3,343,540 to 3,344,313 Xcc-8004.3456.1 Xcc-8004.3459.1: Xcc-8004.3459.1 - FIG01212836: hypothetical protein, at 3,344,461 to 3,344,643 Xcc-8004.3459.1 Xcc-8004.3458.1: Xcc-8004.3458.1 - Mobile element protein, at 3,344,597 to 3,344,863 Xcc-8004.3458.1 Xcc-8004.3460.1: Xcc-8004.3460.1 - Mobile element protein, at 3,344,896 to 3,345,729 Xcc-8004.3460.1 Position (kb) 3343 3344 3345Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3342.650 kb on + strand, within Xcc-8004.3454.1at 3342.651 kb on - strand, within Xcc-8004.3454.1at 3342.651 kb on - strand, within Xcc-8004.3454.1at 3342.746 kb on + strandat 3342.747 kb on - strandat 3342.751 kb on + strandat 3342.752 kb on - strandat 3342.928 kb on + strand, within Xcc-8004.3455.1at 3342.935 kb on + strand, within Xcc-8004.3455.1at 3343.017 kb on - strand, within Xcc-8004.3455.1at 3343.017 kb on - strand, within Xcc-8004.3455.1at 3343.075 kb on + strand, within Xcc-8004.3455.1at 3343.075 kb on + strand, within Xcc-8004.3455.1at 3343.076 kb on - strand, within Xcc-8004.3455.1at 3343.133 kb on + strand, within Xcc-8004.3455.1at 3343.134 kb on - strand, within Xcc-8004.3455.1at 3343.134 kb on - strand, within Xcc-8004.3455.1at 3343.134 kb on - strand, within Xcc-8004.3455.1at 3343.137 kb on - strand, within Xcc-8004.3455.1at 3343.184 kb on + strand, within Xcc-8004.3455.1at 3343.244 kb on + strand, within Xcc-8004.3455.1at 3343.245 kb on - strand, within Xcc-8004.3455.1at 3343.245 kb on - strand, within Xcc-8004.3455.1at 3343.301 kb on - strand, within Xcc-8004.3455.1at 3343.328 kb on + strand, within Xcc-8004.3455.1at 3343.328 kb on + strand, within Xcc-8004.3455.1at 3343.329 kb on - strand, within Xcc-8004.3455.1at 3343.389 kb on + strand, within Xcc-8004.3455.1at 3343.389 kb on + strand, within Xcc-8004.3455.1at 3343.392 kb on - strand, within Xcc-8004.3455.1at 3343.467 kb on + strandat 3343.467 kb on + strandat 3343.468 kb on - strandat 3343.468 kb on - strandat 3343.590 kb on - strandat 3343.633 kb on - strand, within Xcc-8004.3456.1at 3343.660 kb on - strand, within Xcc-8004.3456.1at 3343.685 kb on + strand, within Xcc-8004.3456.1at 3343.685 kb on + strand, within Xcc-8004.3456.1at 3343.685 kb on + strand, within Xcc-8004.3456.1at 3343.685 kb on + strand, within Xcc-8004.3456.1at 3343.700 kb on + strand, within Xcc-8004.3456.1at 3343.701 kb on - strand, within Xcc-8004.3456.1at 3343.701 kb on - strand, within Xcc-8004.3456.1at 3343.701 kb on - strand, within Xcc-8004.3456.1at 3343.732 kb on - strand, within Xcc-8004.3456.1at 3343.745 kb on + strand, within Xcc-8004.3456.1at 3343.746 kb on - strand, within Xcc-8004.3456.1at 3343.746 kb on - strand, within Xcc-8004.3456.1at 3343.749 kb on + strand, within Xcc-8004.3456.1at 3343.764 kb on - strand, within Xcc-8004.3456.1at 3343.772 kb on + strand, within Xcc-8004.3456.1at 3343.801 kb on + strand, within Xcc-8004.3456.1at 3343.802 kb on - strand, within Xcc-8004.3456.1at 3343.989 kb on + strand, within Xcc-8004.3456.1at 3343.990 kb on - strand, within Xcc-8004.3456.1at 3344.042 kb on + strand, within Xcc-8004.3456.1at 3344.043 kb on - strand, within Xcc-8004.3456.1at 3344.043 kb on - strand, within Xcc-8004.3456.1at 3344.043 kb on - strand, within Xcc-8004.3456.1at 3344.043 kb on - strand, within Xcc-8004.3456.1at 3344.067 kb on + strand, within Xcc-8004.3456.1at 3344.068 kb on - strand, within Xcc-8004.3456.1at 3344.068 kb on - strand, within Xcc-8004.3456.1at 3344.239 kb on + strandat 3344.253 kb on + strandat 3344.253 kb on + strandat 3344.254 kb on - strandat 3344.254 kb on - strandat 3344.267 kb on - strandat 3344.268 kb on + strandat 3344.269 kb on - strandat 3344.269 kb on - strandat 3344.357 kb on + strandat 3344.358 kb on - strandat 3344.362 kb on - strandat 3344.362 kb on - strandat 3344.362 kb on - strandat 3344.395 kb on + strandat 3344.395 kb on + strandat 3344.395 kb on + strandat 3344.395 kb on + strandat 3344.395 kb on + strandat 3344.396 kb on - strandat 3344.396 kb on - strandat 3344.396 kb on - strandat 3344.417 kb on - strandat 3344.417 kb on - strandat 3344.417 kb on - strandat 3344.423 kb on + strandat 3344.423 kb on + strandat 3344.503 kb on + strand, within Xcc-8004.3459.1at 3344.503 kb on + strand, within Xcc-8004.3459.1at 3344.504 kb on - strand, within Xcc-8004.3459.1at 3344.556 kb on - strand, within Xcc-8004.3459.1at 3344.571 kb on - strand, within Xcc-8004.3459.1at 3344.571 kb on - strand, within Xcc-8004.3459.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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3,342,650 + Xcc-8004.3454.1 0.75 -0.6
3,342,651 - Xcc-8004.3454.1 0.75 +0.4
3,342,651 - Xcc-8004.3454.1 0.75 +0.7
3,342,746 + +3.0
3,342,747 - +0.5
3,342,751 + -0.2
3,342,752 - -0.9
3,342,928 + Xcc-8004.3455.1 0.22 +0.6
3,342,935 + Xcc-8004.3455.1 0.23 -0.7
3,343,017 - Xcc-8004.3455.1 0.35 +0.0
3,343,017 - Xcc-8004.3455.1 0.35 +1.4
3,343,075 + Xcc-8004.3455.1 0.43 -2.0
3,343,075 + Xcc-8004.3455.1 0.43 +0.3
3,343,076 - Xcc-8004.3455.1 0.43 +0.7
3,343,133 + Xcc-8004.3455.1 0.51 +0.9
3,343,134 - Xcc-8004.3455.1 0.52 +0.9
3,343,134 - Xcc-8004.3455.1 0.52 -0.6
3,343,134 - Xcc-8004.3455.1 0.52 -1.7
3,343,137 - Xcc-8004.3455.1 0.52 +0.4
3,343,184 + Xcc-8004.3455.1 0.59 -0.2
3,343,244 + Xcc-8004.3455.1 0.67 +0.2
3,343,245 - Xcc-8004.3455.1 0.68 -0.7
3,343,245 - Xcc-8004.3455.1 0.68 -2.1
3,343,301 - Xcc-8004.3455.1 0.76 -0.2
3,343,328 + Xcc-8004.3455.1 0.80 -2.4
3,343,328 + Xcc-8004.3455.1 0.80 +1.4
3,343,329 - Xcc-8004.3455.1 0.80 +0.8
3,343,389 + Xcc-8004.3455.1 0.88 +4.7
3,343,389 + Xcc-8004.3455.1 0.88 +1.3
3,343,392 - Xcc-8004.3455.1 0.89 -3.6
3,343,467 + +0.9
3,343,467 + +0.9
3,343,468 - -1.7
3,343,468 - -0.9
3,343,590 - +0.1
3,343,633 - Xcc-8004.3456.1 0.12 -1.2
3,343,660 - Xcc-8004.3456.1 0.16 -1.7
3,343,685 + Xcc-8004.3456.1 0.19 +0.1
3,343,685 + Xcc-8004.3456.1 0.19 +0.1
3,343,685 + Xcc-8004.3456.1 0.19 +0.0
3,343,685 + Xcc-8004.3456.1 0.19 -0.2
3,343,700 + Xcc-8004.3456.1 0.21 +0.0
3,343,701 - Xcc-8004.3456.1 0.21 +0.3
3,343,701 - Xcc-8004.3456.1 0.21 -0.7
3,343,701 - Xcc-8004.3456.1 0.21 +1.7
3,343,732 - Xcc-8004.3456.1 0.25 -2.6
3,343,745 + Xcc-8004.3456.1 0.26 -0.9
3,343,746 - Xcc-8004.3456.1 0.27 -0.1
3,343,746 - Xcc-8004.3456.1 0.27 +0.6
3,343,749 + Xcc-8004.3456.1 0.27 -0.7
3,343,764 - Xcc-8004.3456.1 0.29 -1.9
3,343,772 + Xcc-8004.3456.1 0.30 -0.5
3,343,801 + Xcc-8004.3456.1 0.34 +0.9
3,343,802 - Xcc-8004.3456.1 0.34 -1.6
3,343,989 + Xcc-8004.3456.1 0.58 -0.9
3,343,990 - Xcc-8004.3456.1 0.58 +1.1
3,344,042 + Xcc-8004.3456.1 0.65 -1.2
3,344,043 - Xcc-8004.3456.1 0.65 -0.4
3,344,043 - Xcc-8004.3456.1 0.65 -0.4
3,344,043 - Xcc-8004.3456.1 0.65 -0.4
3,344,043 - Xcc-8004.3456.1 0.65 -0.4
3,344,067 + Xcc-8004.3456.1 0.68 +0.1
3,344,068 - Xcc-8004.3456.1 0.68 -0.6
3,344,068 - Xcc-8004.3456.1 0.68 -0.9
3,344,239 + +0.2
3,344,253 + +1.0
3,344,253 + +0.9
3,344,254 - -0.4
3,344,254 - -2.2
3,344,267 - -1.3
3,344,268 + +0.9
3,344,269 - -0.7
3,344,269 - -0.6
3,344,357 + -0.5
3,344,358 - -0.9
3,344,362 - -0.2
3,344,362 - +0.1
3,344,362 - -0.2
3,344,395 + -1.2
3,344,395 + +1.2
3,344,395 + -1.7
3,344,395 + -2.3
3,344,395 + -3.0
3,344,396 - +0.5
3,344,396 - +0.0
3,344,396 - -2.6
3,344,417 - -0.7
3,344,417 - +0.8
3,344,417 - -0.5
3,344,423 + -1.5
3,344,423 + +0.5
3,344,503 + Xcc-8004.3459.1 0.23 +1.1
3,344,503 + Xcc-8004.3459.1 0.23 -0.5
3,344,504 - Xcc-8004.3459.1 0.23 -1.7
3,344,556 - Xcc-8004.3459.1 0.52 -0.4
3,344,571 - Xcc-8004.3459.1 0.60 +0.3
3,344,571 - Xcc-8004.3459.1 0.60 -2.9

Or see this region's nucleotide sequence