Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2708.1

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2707.1 and Xcc-8004.2708.1 are separated by 56 nucleotidesXcc-8004.2708.1 and Xcc-8004.2709.1 are separated by 33 nucleotidesXcc-8004.2709.1 and Xcc-8004.2710.1 are separated by 36 nucleotides Xcc-8004.2707.1: Xcc-8004.2707.1 - Homoserine dehydrogenase (EC 1.1.1.3), at 2,616,916 to 2,618,214 Xcc-8004.2707.1 Xcc-8004.2708.1: Xcc-8004.2708.1 - Exopolysaccharide production protein ExoZ, at 2,618,271 to 2,619,356 Xcc-8004.2708.1 Xcc-8004.2709.1: Xcc-8004.2709.1 - Uroporphyrinogen-III methyltransferase (EC 2.1.1.107), at 2,619,390 to 2,620,166 Xcc-8004.2709.1 Xcc-8004.2710.1: Xcc-8004.2710.1 - Assimilatory nitrate reductase large subunit (EC:1.7.99.4), at 2,620,203 to 2,623,001 Xcc-8004.2710.1 Position (kb) 2618 2619 2620Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2617.639 kb on + strand, within Xcc-8004.2707.1at 2617.679 kb on - strand, within Xcc-8004.2707.1at 2617.720 kb on + strand, within Xcc-8004.2707.1at 2617.720 kb on + strand, within Xcc-8004.2707.1at 2617.721 kb on - strand, within Xcc-8004.2707.1at 2617.721 kb on - strand, within Xcc-8004.2707.1at 2617.721 kb on - strand, within Xcc-8004.2707.1at 2617.792 kb on + strand, within Xcc-8004.2707.1at 2617.792 kb on + strand, within Xcc-8004.2707.1at 2617.792 kb on + strand, within Xcc-8004.2707.1at 2617.793 kb on - strand, within Xcc-8004.2707.1at 2617.793 kb on - strand, within Xcc-8004.2707.1at 2617.804 kb on + strand, within Xcc-8004.2707.1at 2617.828 kb on + strand, within Xcc-8004.2707.1at 2617.829 kb on - strand, within Xcc-8004.2707.1at 2617.829 kb on - strand, within Xcc-8004.2707.1at 2617.829 kb on - strand, within Xcc-8004.2707.1at 2617.829 kb on - strand, within Xcc-8004.2707.1at 2617.829 kb on - strand, within Xcc-8004.2707.1at 2617.837 kb on + strand, within Xcc-8004.2707.1at 2617.837 kb on + strand, within Xcc-8004.2707.1at 2617.838 kb on - strand, within Xcc-8004.2707.1at 2617.838 kb on - strand, within Xcc-8004.2707.1at 2617.838 kb on - strand, within Xcc-8004.2707.1at 2617.846 kb on + strand, within Xcc-8004.2707.1at 2617.847 kb on - strand, within Xcc-8004.2707.1at 2618.002 kb on + strand, within Xcc-8004.2707.1at 2618.003 kb on - strand, within Xcc-8004.2707.1at 2618.003 kb on - strand, within Xcc-8004.2707.1at 2618.003 kb on - strand, within Xcc-8004.2707.1at 2618.003 kb on - strand, within Xcc-8004.2707.1at 2618.003 kb on - strand, within Xcc-8004.2707.1at 2618.003 kb on - strand, within Xcc-8004.2707.1at 2618.011 kb on + strand, within Xcc-8004.2707.1at 2618.011 kb on + strand, within Xcc-8004.2707.1at 2618.012 kb on - strand, within Xcc-8004.2707.1at 2618.114 kb on + strandat 2618.114 kb on + strandat 2618.114 kb on + strandat 2618.115 kb on - strandat 2618.122 kb on + strandat 2618.122 kb on + strandat 2618.123 kb on - strandat 2618.123 kb on - strandat 2618.123 kb on - strandat 2618.369 kb on + strandat 2618.369 kb on + strandat 2618.370 kb on - strandat 2618.424 kb on + strand, within Xcc-8004.2708.1at 2618.424 kb on + strand, within Xcc-8004.2708.1at 2618.424 kb on + strand, within Xcc-8004.2708.1at 2618.424 kb on + strand, within Xcc-8004.2708.1at 2618.425 kb on - strand, within Xcc-8004.2708.1at 2618.469 kb on + strand, within Xcc-8004.2708.1at 2618.469 kb on + strand, within Xcc-8004.2708.1at 2618.469 kb on + strand, within Xcc-8004.2708.1at 2618.469 kb on + strand, within Xcc-8004.2708.1at 2618.470 kb on - strand, within Xcc-8004.2708.1at 2618.470 kb on - strand, within Xcc-8004.2708.1at 2618.470 kb on - strand, within Xcc-8004.2708.1at 2618.470 kb on - strand, within Xcc-8004.2708.1at 2618.470 kb on - strand, within Xcc-8004.2708.1at 2618.470 kb on - strand, within Xcc-8004.2708.1at 2618.472 kb on + strand, within Xcc-8004.2708.1at 2618.472 kb on + strand, within Xcc-8004.2708.1at 2618.472 kb on + strand, within Xcc-8004.2708.1at 2618.473 kb on - strand, within Xcc-8004.2708.1at 2618.473 kb on - strand, within Xcc-8004.2708.1at 2618.473 kb on - strand, within Xcc-8004.2708.1at 2618.473 kb on - strand, within Xcc-8004.2708.1at 2618.473 kb on - strand, within Xcc-8004.2708.1at 2618.473 kb on - strand, within Xcc-8004.2708.1at 2618.517 kb on + strand, within Xcc-8004.2708.1at 2618.517 kb on + strand, within Xcc-8004.2708.1at 2618.517 kb on + strand, within Xcc-8004.2708.1at 2618.517 kb on + strand, within Xcc-8004.2708.1at 2618.517 kb on + strand, within Xcc-8004.2708.1at 2618.518 kb on - strand, within Xcc-8004.2708.1at 2618.518 kb on - strand, within Xcc-8004.2708.1at 2618.518 kb on - strand, within Xcc-8004.2708.1at 2618.518 kb on - strand, within Xcc-8004.2708.1at 2618.518 kb on - strand, within Xcc-8004.2708.1at 2618.518 kb on - strand, within Xcc-8004.2708.1at 2618.518 kb on - strand, within Xcc-8004.2708.1at 2618.518 kb on - strand, within Xcc-8004.2708.1at 2618.518 kb on - strand, within Xcc-8004.2708.1at 2618.518 kb on - strand, within Xcc-8004.2708.1at 2618.544 kb on + strand, within Xcc-8004.2708.1at 2618.544 kb on + strand, within Xcc-8004.2708.1at 2618.544 kb on + strand, within Xcc-8004.2708.1at 2618.545 kb on - strand, within Xcc-8004.2708.1at 2618.545 kb on - strand, within Xcc-8004.2708.1at 2618.545 kb on - strand, within Xcc-8004.2708.1at 2618.586 kb on + strand, within Xcc-8004.2708.1at 2618.586 kb on + strand, within Xcc-8004.2708.1at 2618.587 kb on - strand, within Xcc-8004.2708.1at 2618.587 kb on - strand, within Xcc-8004.2708.1at 2618.587 kb on - strand, within Xcc-8004.2708.1at 2618.587 kb on - strand, within Xcc-8004.2708.1at 2618.587 kb on - strand, within Xcc-8004.2708.1at 2618.587 kb on - strand, within Xcc-8004.2708.1at 2618.715 kb on + strand, within Xcc-8004.2708.1at 2618.715 kb on + strand, within Xcc-8004.2708.1at 2618.716 kb on - strand, within Xcc-8004.2708.1at 2618.716 kb on - strand, within Xcc-8004.2708.1at 2618.716 kb on - strand, within Xcc-8004.2708.1at 2618.793 kb on + strand, within Xcc-8004.2708.1at 2618.793 kb on + strand, within Xcc-8004.2708.1at 2618.793 kb on + strand, within Xcc-8004.2708.1at 2618.793 kb on + strand, within Xcc-8004.2708.1at 2618.794 kb on - strand, within Xcc-8004.2708.1at 2618.794 kb on - strand, within Xcc-8004.2708.1at 2618.794 kb on - strand, within Xcc-8004.2708.1at 2619.163 kb on - strand, within Xcc-8004.2708.1at 2619.163 kb on - strand, within Xcc-8004.2708.1at 2619.163 kb on - strand, within Xcc-8004.2708.1at 2619.171 kb on + strand, within Xcc-8004.2708.1at 2619.171 kb on + strand, within Xcc-8004.2708.1at 2619.171 kb on + strand, within Xcc-8004.2708.1at 2619.172 kb on - strand, within Xcc-8004.2708.1at 2619.172 kb on - strand, within Xcc-8004.2708.1at 2619.172 kb on - strand, within Xcc-8004.2708.1at 2619.172 kb on - strand, within Xcc-8004.2708.1at 2619.172 kb on - strand, within Xcc-8004.2708.1at 2619.172 kb on - strand, within Xcc-8004.2708.1at 2619.172 kb on - strand, within Xcc-8004.2708.1at 2619.279 kb on - strandat 2619.306 kb on + strandat 2619.307 kb on - strandat 2619.354 kb on + strandat 2619.365 kb on + strandat 2619.365 kb on + strandat 2619.365 kb on + strandat 2619.365 kb on + strandat 2619.365 kb on + strandat 2619.366 kb on - strandat 2619.366 kb on - strandat 2619.366 kb on - strandat 2619.649 kb on + strand, within Xcc-8004.2709.1at 2619.649 kb on + strand, within Xcc-8004.2709.1at 2619.649 kb on + strand, within Xcc-8004.2709.1at 2619.649 kb on + strand, within Xcc-8004.2709.1at 2619.649 kb on + strand, within Xcc-8004.2709.1at 2619.649 kb on + strand, within Xcc-8004.2709.1at 2619.649 kb on + strand, within Xcc-8004.2709.1at 2619.649 kb on + strand, within Xcc-8004.2709.1at 2619.649 kb on + strand, within Xcc-8004.2709.1at 2619.649 kb on + strand, within Xcc-8004.2709.1at 2619.649 kb on + strand, within Xcc-8004.2709.1at 2619.649 kb on + strand, within Xcc-8004.2709.1at 2619.649 kb on + strand, within Xcc-8004.2709.1at 2619.650 kb on - strand, within Xcc-8004.2709.1at 2619.650 kb on - strand, within Xcc-8004.2709.1at 2619.650 kb on - strand, within Xcc-8004.2709.1at 2619.650 kb on - strand, within Xcc-8004.2709.1at 2619.650 kb on - strand, within Xcc-8004.2709.1at 2619.650 kb on - strand, within Xcc-8004.2709.1at 2619.650 kb on - strand, within Xcc-8004.2709.1at 2619.650 kb on - strand, within Xcc-8004.2709.1at 2619.713 kb on + strand, within Xcc-8004.2709.1at 2619.713 kb on + strand, within Xcc-8004.2709.1at 2619.713 kb on + strand, within Xcc-8004.2709.1at 2619.714 kb on - strand, within Xcc-8004.2709.1at 2619.714 kb on - strand, within Xcc-8004.2709.1at 2619.714 kb on - strand, within Xcc-8004.2709.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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2,617,639 + Xcc-8004.2707.1 0.56 -0.8
2,617,679 - Xcc-8004.2707.1 0.59 -0.4
2,617,720 + Xcc-8004.2707.1 0.62 -0.6
2,617,720 + Xcc-8004.2707.1 0.62 -0.2
2,617,721 - Xcc-8004.2707.1 0.62 -0.5
2,617,721 - Xcc-8004.2707.1 0.62 -0.8
2,617,721 - Xcc-8004.2707.1 0.62 -0.0
2,617,792 + Xcc-8004.2707.1 0.67 -2.0
2,617,792 + Xcc-8004.2707.1 0.67 -0.1
2,617,792 + Xcc-8004.2707.1 0.67 +0.4
2,617,793 - Xcc-8004.2707.1 0.68 -0.1
2,617,793 - Xcc-8004.2707.1 0.68 -1.8
2,617,804 + Xcc-8004.2707.1 0.68 -1.0
2,617,828 + Xcc-8004.2707.1 0.70 -2.0
2,617,829 - Xcc-8004.2707.1 0.70 +0.8
2,617,829 - Xcc-8004.2707.1 0.70 +0.2
2,617,829 - Xcc-8004.2707.1 0.70 -2.3
2,617,829 - Xcc-8004.2707.1 0.70 +0.3
2,617,829 - Xcc-8004.2707.1 0.70 +0.2
2,617,837 + Xcc-8004.2707.1 0.71 -1.3
2,617,837 + Xcc-8004.2707.1 0.71 -0.7
2,617,838 - Xcc-8004.2707.1 0.71 -1.5
2,617,838 - Xcc-8004.2707.1 0.71 -0.6
2,617,838 - Xcc-8004.2707.1 0.71 -0.6
2,617,846 + Xcc-8004.2707.1 0.72 -0.4
2,617,847 - Xcc-8004.2707.1 0.72 -1.4
2,618,002 + Xcc-8004.2707.1 0.84 -0.3
2,618,003 - Xcc-8004.2707.1 0.84 -1.8
2,618,003 - Xcc-8004.2707.1 0.84 +0.0
2,618,003 - Xcc-8004.2707.1 0.84 +0.1
2,618,003 - Xcc-8004.2707.1 0.84 +0.1
2,618,003 - Xcc-8004.2707.1 0.84 +0.1
2,618,003 - Xcc-8004.2707.1 0.84 +0.6
2,618,011 + Xcc-8004.2707.1 0.84 +0.1
2,618,011 + Xcc-8004.2707.1 0.84 +0.6
2,618,012 - Xcc-8004.2707.1 0.84 -2.1
2,618,114 + -0.6
2,618,114 + +0.2
2,618,114 + -0.6
2,618,115 - +2.2
2,618,122 + -1.5
2,618,122 + -0.9
2,618,123 - +1.1
2,618,123 - +1.6
2,618,123 - +0.1
2,618,369 + -0.3
2,618,369 + +2.5
2,618,370 - +0.5
2,618,424 + Xcc-8004.2708.1 0.14 -0.0
2,618,424 + Xcc-8004.2708.1 0.14 -0.8
2,618,424 + Xcc-8004.2708.1 0.14 +3.2
2,618,424 + Xcc-8004.2708.1 0.14 +0.7
2,618,425 - Xcc-8004.2708.1 0.14 +0.4
2,618,469 + Xcc-8004.2708.1 0.18 -1.2
2,618,469 + Xcc-8004.2708.1 0.18 +1.3
2,618,469 + Xcc-8004.2708.1 0.18 +0.6
2,618,469 + Xcc-8004.2708.1 0.18 +0.8
2,618,470 - Xcc-8004.2708.1 0.18 +0.4
2,618,470 - Xcc-8004.2708.1 0.18 +0.8
2,618,470 - Xcc-8004.2708.1 0.18 -1.3
2,618,470 - Xcc-8004.2708.1 0.18 -2.0
2,618,470 - Xcc-8004.2708.1 0.18 -1.5
2,618,470 - Xcc-8004.2708.1 0.18 +0.6
2,618,472 + Xcc-8004.2708.1 0.19 +3.5
2,618,472 + Xcc-8004.2708.1 0.19 +0.0
2,618,472 + Xcc-8004.2708.1 0.19 -0.7
2,618,473 - Xcc-8004.2708.1 0.19 +0.5
2,618,473 - Xcc-8004.2708.1 0.19 +0.0
2,618,473 - Xcc-8004.2708.1 0.19 +0.4
2,618,473 - Xcc-8004.2708.1 0.19 -0.6
2,618,473 - Xcc-8004.2708.1 0.19 +1.7
2,618,473 - Xcc-8004.2708.1 0.19 -1.7
2,618,517 + Xcc-8004.2708.1 0.23 -1.7
2,618,517 + Xcc-8004.2708.1 0.23 +0.3
2,618,517 + Xcc-8004.2708.1 0.23 +0.7
2,618,517 + Xcc-8004.2708.1 0.23 +1.3
2,618,517 + Xcc-8004.2708.1 0.23 -1.1
2,618,518 - Xcc-8004.2708.1 0.23 +1.1
2,618,518 - Xcc-8004.2708.1 0.23 -0.4
2,618,518 - Xcc-8004.2708.1 0.23 +1.0
2,618,518 - Xcc-8004.2708.1 0.23 -0.4
2,618,518 - Xcc-8004.2708.1 0.23 -1.8
2,618,518 - Xcc-8004.2708.1 0.23 -2.9
2,618,518 - Xcc-8004.2708.1 0.23 -1.1
2,618,518 - Xcc-8004.2708.1 0.23 +1.0
2,618,518 - Xcc-8004.2708.1 0.23 -0.8
2,618,518 - Xcc-8004.2708.1 0.23 -1.2
2,618,544 + Xcc-8004.2708.1 0.25 +1.2
2,618,544 + Xcc-8004.2708.1 0.25 +0.7
2,618,544 + Xcc-8004.2708.1 0.25 +0.7
2,618,545 - Xcc-8004.2708.1 0.25 -0.5
2,618,545 - Xcc-8004.2708.1 0.25 +0.7
2,618,545 - Xcc-8004.2708.1 0.25 -0.2
2,618,586 + Xcc-8004.2708.1 0.29 -1.1
2,618,586 + Xcc-8004.2708.1 0.29 +0.5
2,618,587 - Xcc-8004.2708.1 0.29 -0.0
2,618,587 - Xcc-8004.2708.1 0.29 -0.2
2,618,587 - Xcc-8004.2708.1 0.29 -0.5
2,618,587 - Xcc-8004.2708.1 0.29 -2.9
2,618,587 - Xcc-8004.2708.1 0.29 -0.1
2,618,587 - Xcc-8004.2708.1 0.29 +0.6
2,618,715 + Xcc-8004.2708.1 0.41 +1.3
2,618,715 + Xcc-8004.2708.1 0.41 +0.8
2,618,716 - Xcc-8004.2708.1 0.41 +1.8
2,618,716 - Xcc-8004.2708.1 0.41 -0.2
2,618,716 - Xcc-8004.2708.1 0.41 -1.5
2,618,793 + Xcc-8004.2708.1 0.48 +2.0
2,618,793 + Xcc-8004.2708.1 0.48 -0.8
2,618,793 + Xcc-8004.2708.1 0.48 -0.4
2,618,793 + Xcc-8004.2708.1 0.48 +1.2
2,618,794 - Xcc-8004.2708.1 0.48 -0.5
2,618,794 - Xcc-8004.2708.1 0.48 -0.7
2,618,794 - Xcc-8004.2708.1 0.48 -0.2
2,619,163 - Xcc-8004.2708.1 0.82 -1.5
2,619,163 - Xcc-8004.2708.1 0.82 +0.7
2,619,163 - Xcc-8004.2708.1 0.82 -0.8
2,619,171 + Xcc-8004.2708.1 0.83 +0.5
2,619,171 + Xcc-8004.2708.1 0.83 +1.2
2,619,171 + Xcc-8004.2708.1 0.83 -0.3
2,619,172 - Xcc-8004.2708.1 0.83 +1.7
2,619,172 - Xcc-8004.2708.1 0.83 +1.4
2,619,172 - Xcc-8004.2708.1 0.83 -1.0
2,619,172 - Xcc-8004.2708.1 0.83 -0.1
2,619,172 - Xcc-8004.2708.1 0.83 -0.2
2,619,172 - Xcc-8004.2708.1 0.83 +1.0
2,619,172 - Xcc-8004.2708.1 0.83 -1.2
2,619,279 - +0.5
2,619,306 + +0.8
2,619,307 - -0.6
2,619,354 + -1.4
2,619,365 + -3.2
2,619,365 + +0.1
2,619,365 + +0.1
2,619,365 + -0.3
2,619,365 + +0.1
2,619,366 - -0.2
2,619,366 - +0.4
2,619,366 - -0.5
2,619,649 + Xcc-8004.2709.1 0.33 -1.1
2,619,649 + Xcc-8004.2709.1 0.33 +0.5
2,619,649 + Xcc-8004.2709.1 0.33 -0.3
2,619,649 + Xcc-8004.2709.1 0.33 +1.8
2,619,649 + Xcc-8004.2709.1 0.33 -1.4
2,619,649 + Xcc-8004.2709.1 0.33 -0.9
2,619,649 + Xcc-8004.2709.1 0.33 +0.5
2,619,649 + Xcc-8004.2709.1 0.33 -1.5
2,619,649 + Xcc-8004.2709.1 0.33 +0.8
2,619,649 + Xcc-8004.2709.1 0.33 -0.9
2,619,649 + Xcc-8004.2709.1 0.33 +1.7
2,619,649 + Xcc-8004.2709.1 0.33 -1.4
2,619,649 + Xcc-8004.2709.1 0.33 +0.4
2,619,650 - Xcc-8004.2709.1 0.33 -0.2
2,619,650 - Xcc-8004.2709.1 0.33 -0.7
2,619,650 - Xcc-8004.2709.1 0.33 +0.0
2,619,650 - Xcc-8004.2709.1 0.33 -1.5
2,619,650 - Xcc-8004.2709.1 0.33 -0.4
2,619,650 - Xcc-8004.2709.1 0.33 +2.0
2,619,650 - Xcc-8004.2709.1 0.33 +0.7
2,619,650 - Xcc-8004.2709.1 0.33 +0.2
2,619,713 + Xcc-8004.2709.1 0.42 +0.1
2,619,713 + Xcc-8004.2709.1 0.42 +0.3
2,619,713 + Xcc-8004.2709.1 0.42 -1.1
2,619,714 - Xcc-8004.2709.1 0.42 +2.7
2,619,714 - Xcc-8004.2709.1 0.42 +0.6
2,619,714 - Xcc-8004.2709.1 0.42 -0.0

Or see this region's nucleotide sequence