Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2373.1

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2372.1 and Xcc-8004.2373.1 overlap by 8 nucleotidesXcc-8004.2373.1 and Xcc-8004.2374.1 are separated by 6 nucleotidesXcc-8004.2374.1 and Xcc-8004.2375.1 are separated by 78 nucleotides Xcc-8004.2372.1: Xcc-8004.2372.1 - Pheromone shutdown protein, at 2,317,439 to 2,318,671 Xcc-8004.2372.1 Xcc-8004.2373.1: Xcc-8004.2373.1 - Phosphinothricin N-acetyltransferase, at 2,318,664 to 2,319,191 Xcc-8004.2373.1 Xcc-8004.2374.1: Xcc-8004.2374.1 - N-carbamoylputrescine amidase (3.5.1.53) / Aliphatic amidase AmiE (EC 3.5.1.4), at 2,319,198 to 2,320,082 Xcc-8004.2374.1 Xcc-8004.2375.1: Xcc-8004.2375.1 - Agmatine deiminase (EC 3.5.3.12), at 2,320,161 to 2,321,204 Xcc-8004.2375.1 Position (kb) 2318 2319 2320Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2317.758 kb on + strand, within Xcc-8004.2372.1at 2317.758 kb on + strand, within Xcc-8004.2372.1at 2317.759 kb on - strand, within Xcc-8004.2372.1at 2317.759 kb on - strand, within Xcc-8004.2372.1at 2317.759 kb on - strand, within Xcc-8004.2372.1at 2317.870 kb on + strand, within Xcc-8004.2372.1at 2317.870 kb on + strand, within Xcc-8004.2372.1at 2317.870 kb on + strand, within Xcc-8004.2372.1at 2317.870 kb on + strand, within Xcc-8004.2372.1at 2317.871 kb on - strand, within Xcc-8004.2372.1at 2317.891 kb on - strand, within Xcc-8004.2372.1at 2317.985 kb on + strand, within Xcc-8004.2372.1at 2317.985 kb on + strand, within Xcc-8004.2372.1at 2317.985 kb on + strand, within Xcc-8004.2372.1at 2317.985 kb on + strand, within Xcc-8004.2372.1at 2318.005 kb on + strand, within Xcc-8004.2372.1at 2318.006 kb on - strand, within Xcc-8004.2372.1at 2318.006 kb on - strand, within Xcc-8004.2372.1at 2318.034 kb on + strand, within Xcc-8004.2372.1at 2318.035 kb on - strand, within Xcc-8004.2372.1at 2318.035 kb on - strand, within Xcc-8004.2372.1at 2318.035 kb on - strand, within Xcc-8004.2372.1at 2318.035 kb on - strand, within Xcc-8004.2372.1at 2318.361 kb on + strand, within Xcc-8004.2372.1at 2318.362 kb on - strand, within Xcc-8004.2372.1at 2318.577 kb on + strandat 2318.577 kb on + strandat 2318.578 kb on - strandat 2318.774 kb on + strand, within Xcc-8004.2373.1at 2318.774 kb on + strand, within Xcc-8004.2373.1at 2318.775 kb on - strand, within Xcc-8004.2373.1at 2318.932 kb on + strand, within Xcc-8004.2373.1at 2318.932 kb on + strand, within Xcc-8004.2373.1at 2318.932 kb on + strand, within Xcc-8004.2373.1at 2318.932 kb on + strand, within Xcc-8004.2373.1at 2318.933 kb on - strand, within Xcc-8004.2373.1at 2318.933 kb on - strand, within Xcc-8004.2373.1at 2318.977 kb on + strand, within Xcc-8004.2373.1at 2318.978 kb on - strand, within Xcc-8004.2373.1at 2318.989 kb on + strand, within Xcc-8004.2373.1at 2318.989 kb on + strand, within Xcc-8004.2373.1at 2318.990 kb on - strand, within Xcc-8004.2373.1at 2318.990 kb on - strand, within Xcc-8004.2373.1at 2319.031 kb on + strand, within Xcc-8004.2373.1at 2319.031 kb on + strand, within Xcc-8004.2373.1at 2319.032 kb on - strand, within Xcc-8004.2373.1at 2319.032 kb on - strand, within Xcc-8004.2373.1at 2319.097 kb on + strand, within Xcc-8004.2373.1at 2319.097 kb on + strand, within Xcc-8004.2373.1at 2319.097 kb on + strand, within Xcc-8004.2373.1at 2319.097 kb on + strand, within Xcc-8004.2373.1at 2319.097 kb on + strand, within Xcc-8004.2373.1at 2319.098 kb on - strand, within Xcc-8004.2373.1at 2319.098 kb on - strand, within Xcc-8004.2373.1at 2319.098 kb on - strand, within Xcc-8004.2373.1at 2319.098 kb on - strand, within Xcc-8004.2373.1at 2319.098 kb on - strand, within Xcc-8004.2373.1at 2319.103 kb on + strand, within Xcc-8004.2373.1at 2319.103 kb on + strand, within Xcc-8004.2373.1at 2319.103 kb on + strand, within Xcc-8004.2373.1at 2319.103 kb on + strand, within Xcc-8004.2373.1at 2319.103 kb on + strand, within Xcc-8004.2373.1at 2319.103 kb on + strand, within Xcc-8004.2373.1at 2319.104 kb on - strand, within Xcc-8004.2373.1at 2319.104 kb on - strand, within Xcc-8004.2373.1at 2319.104 kb on - strand, within Xcc-8004.2373.1at 2319.104 kb on - strand, within Xcc-8004.2373.1at 2319.104 kb on - strand, within Xcc-8004.2373.1at 2319.104 kb on - strand, within Xcc-8004.2373.1at 2319.133 kb on + strand, within Xcc-8004.2373.1at 2319.133 kb on + strand, within Xcc-8004.2373.1at 2319.134 kb on - strand, within Xcc-8004.2373.1at 2319.134 kb on - strand, within Xcc-8004.2373.1at 2319.134 kb on - strand, within Xcc-8004.2373.1at 2320.087 kb on - strandat 2320.087 kb on - strandat 2320.087 kb on - strandat 2320.099 kb on - strandat 2320.155 kb on + strandat 2320.156 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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2,317,758 + Xcc-8004.2372.1 0.26 -2.4
2,317,758 + Xcc-8004.2372.1 0.26 +1.4
2,317,759 - Xcc-8004.2372.1 0.26 -0.9
2,317,759 - Xcc-8004.2372.1 0.26 +0.5
2,317,759 - Xcc-8004.2372.1 0.26 +0.2
2,317,870 + Xcc-8004.2372.1 0.35 -0.5
2,317,870 + Xcc-8004.2372.1 0.35 -2.5
2,317,870 + Xcc-8004.2372.1 0.35 -1.4
2,317,870 + Xcc-8004.2372.1 0.35 +0.1
2,317,871 - Xcc-8004.2372.1 0.35 -2.4
2,317,891 - Xcc-8004.2372.1 0.37 -2.0
2,317,985 + Xcc-8004.2372.1 0.44 -0.3
2,317,985 + Xcc-8004.2372.1 0.44 -1.4
2,317,985 + Xcc-8004.2372.1 0.44 -1.8
2,317,985 + Xcc-8004.2372.1 0.44 -0.3
2,318,005 + Xcc-8004.2372.1 0.46 +0.4
2,318,006 - Xcc-8004.2372.1 0.46 -0.3
2,318,006 - Xcc-8004.2372.1 0.46 +0.2
2,318,034 + Xcc-8004.2372.1 0.48 -0.8
2,318,035 - Xcc-8004.2372.1 0.48 -2.9
2,318,035 - Xcc-8004.2372.1 0.48 -1.0
2,318,035 - Xcc-8004.2372.1 0.48 -0.6
2,318,035 - Xcc-8004.2372.1 0.48 +0.9
2,318,361 + Xcc-8004.2372.1 0.75 +0.1
2,318,362 - Xcc-8004.2372.1 0.75 +0.4
2,318,577 + -1.7
2,318,577 + -0.1
2,318,578 - -1.6
2,318,774 + Xcc-8004.2373.1 0.21 +1.5
2,318,774 + Xcc-8004.2373.1 0.21 -0.2
2,318,775 - Xcc-8004.2373.1 0.21 +0.9
2,318,932 + Xcc-8004.2373.1 0.51 -0.8
2,318,932 + Xcc-8004.2373.1 0.51 -1.7
2,318,932 + Xcc-8004.2373.1 0.51 -0.6
2,318,932 + Xcc-8004.2373.1 0.51 -1.3
2,318,933 - Xcc-8004.2373.1 0.51 +1.4
2,318,933 - Xcc-8004.2373.1 0.51 -0.1
2,318,977 + Xcc-8004.2373.1 0.59 -0.1
2,318,978 - Xcc-8004.2373.1 0.59 +1.2
2,318,989 + Xcc-8004.2373.1 0.62 -1.1
2,318,989 + Xcc-8004.2373.1 0.62 -2.2
2,318,990 - Xcc-8004.2373.1 0.62 +0.5
2,318,990 - Xcc-8004.2373.1 0.62 +0.2
2,319,031 + Xcc-8004.2373.1 0.70 -1.1
2,319,031 + Xcc-8004.2373.1 0.70 -1.3
2,319,032 - Xcc-8004.2373.1 0.70 +0.8
2,319,032 - Xcc-8004.2373.1 0.70 -2.5
2,319,097 + Xcc-8004.2373.1 0.82 -0.5
2,319,097 + Xcc-8004.2373.1 0.82 +1.5
2,319,097 + Xcc-8004.2373.1 0.82 -0.7
2,319,097 + Xcc-8004.2373.1 0.82 -1.1
2,319,097 + Xcc-8004.2373.1 0.82 +0.5
2,319,098 - Xcc-8004.2373.1 0.82 +0.1
2,319,098 - Xcc-8004.2373.1 0.82 +0.0
2,319,098 - Xcc-8004.2373.1 0.82 +0.7
2,319,098 - Xcc-8004.2373.1 0.82 +0.4
2,319,098 - Xcc-8004.2373.1 0.82 +1.2
2,319,103 + Xcc-8004.2373.1 0.83 -0.8
2,319,103 + Xcc-8004.2373.1 0.83 -0.4
2,319,103 + Xcc-8004.2373.1 0.83 -1.9
2,319,103 + Xcc-8004.2373.1 0.83 -1.0
2,319,103 + Xcc-8004.2373.1 0.83 +1.9
2,319,103 + Xcc-8004.2373.1 0.83 +1.6
2,319,104 - Xcc-8004.2373.1 0.83 +0.4
2,319,104 - Xcc-8004.2373.1 0.83 -0.2
2,319,104 - Xcc-8004.2373.1 0.83 +0.2
2,319,104 - Xcc-8004.2373.1 0.83 +0.7
2,319,104 - Xcc-8004.2373.1 0.83 +0.4
2,319,104 - Xcc-8004.2373.1 0.83 +0.5
2,319,133 + Xcc-8004.2373.1 0.89 -2.4
2,319,133 + Xcc-8004.2373.1 0.89 -0.1
2,319,134 - Xcc-8004.2373.1 0.89 -2.1
2,319,134 - Xcc-8004.2373.1 0.89 -0.3
2,319,134 - Xcc-8004.2373.1 0.89 -0.1
2,320,087 - +1.6
2,320,087 - -2.5
2,320,087 - -1.8
2,320,099 - -0.3
2,320,155 + +3.5
2,320,156 - +2.2

Or see this region's nucleotide sequence