Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1795.1 and Xcc-8004.1796.1 overlap by 8 nucleotides Xcc-8004.1796.1 and Xcc-8004.1797.1 are separated by 271 nucleotides
Xcc-8004.1795.1: Xcc-8004.1795.1 - RND efflux system, outer membrane lipoprotein CmeC, at 1,731,551 to 1,733,044
Xcc-8004.1795.1
Xcc-8004.1796.1: Xcc-8004.1796.1 - hypothetical protein, at 1,733,037 to 1,733,759
Xcc-8004.1796.1
Xcc-8004.1797.1: Xcc-8004.1797.1 - Aldo-keto reductase, at 1,734,031 to 1,735,014
Xcc-8004.1797.1
Position (kb) 1733
1734 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1732.075 kb on + strand, within Xcc-8004.1795.1 at 1732.076 kb on - strand, within Xcc-8004.1795.1 at 1732.115 kb on + strand, within Xcc-8004.1795.1 at 1732.152 kb on + strand, within Xcc-8004.1795.1 at 1732.153 kb on - strand, within Xcc-8004.1795.1 at 1732.187 kb on + strand, within Xcc-8004.1795.1 at 1732.290 kb on - strand, within Xcc-8004.1795.1 at 1732.290 kb on - strand, within Xcc-8004.1795.1 at 1732.868 kb on + strand, within Xcc-8004.1795.1 at 1732.868 kb on + strand, within Xcc-8004.1795.1 at 1732.869 kb on - strand, within Xcc-8004.1795.1 at 1732.902 kb on - strand at 1732.964 kb on + strand at 1732.965 kb on - strand at 1732.965 kb on - strand at 1732.965 kb on - strand at 1733.141 kb on + strand, within Xcc-8004.1796.1 at 1733.214 kb on + strand, within Xcc-8004.1796.1 at 1733.214 kb on + strand, within Xcc-8004.1796.1 at 1733.214 kb on + strand, within Xcc-8004.1796.1 at 1733.214 kb on + strand, within Xcc-8004.1796.1 at 1733.215 kb on - strand, within Xcc-8004.1796.1 at 1733.220 kb on + strand, within Xcc-8004.1796.1 at 1733.221 kb on - strand, within Xcc-8004.1796.1 at 1733.221 kb on - strand, within Xcc-8004.1796.1 at 1733.394 kb on + strand, within Xcc-8004.1796.1 at 1733.395 kb on - strand, within Xcc-8004.1796.1 at 1733.466 kb on + strand, within Xcc-8004.1796.1 at 1733.631 kb on + strand, within Xcc-8004.1796.1 at 1734.036 kb on + strand at 1734.036 kb on + strand at 1734.036 kb on + strand at 1734.036 kb on + strand at 1734.037 kb on - strand at 1734.037 kb on - strand at 1734.103 kb on + strand at 1734.104 kb on - strand at 1734.199 kb on + strand, within Xcc-8004.1797.1 at 1734.379 kb on - strand, within Xcc-8004.1797.1 at 1734.391 kb on + strand, within Xcc-8004.1797.1 at 1734.392 kb on - strand, within Xcc-8004.1797.1 at 1734.557 kb on - strand, within Xcc-8004.1797.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 1,732,075 + Xcc-8004.1795.1 0.35 -0.1 1,732,076 - Xcc-8004.1795.1 0.35 +0.4 1,732,115 + Xcc-8004.1795.1 0.38 -1.7 1,732,152 + Xcc-8004.1795.1 0.40 -0.1 1,732,153 - Xcc-8004.1795.1 0.40 +0.1 1,732,187 + Xcc-8004.1795.1 0.43 -0.1 1,732,290 - Xcc-8004.1795.1 0.49 -2.5 1,732,290 - Xcc-8004.1795.1 0.49 +0.5 1,732,868 + Xcc-8004.1795.1 0.88 +0.4 1,732,868 + Xcc-8004.1795.1 0.88 +0.8 1,732,869 - Xcc-8004.1795.1 0.88 +1.4 1,732,902 - +0.4 1,732,964 + -1.1 1,732,965 - -0.1 1,732,965 - +0.8 1,732,965 - +0.0 1,733,141 + Xcc-8004.1796.1 0.14 +0.8 1,733,214 + Xcc-8004.1796.1 0.24 +1.6 1,733,214 + Xcc-8004.1796.1 0.24 +0.3 1,733,214 + Xcc-8004.1796.1 0.24 +0.9 1,733,214 + Xcc-8004.1796.1 0.24 +0.5 1,733,215 - Xcc-8004.1796.1 0.25 +0.1 1,733,220 + Xcc-8004.1796.1 0.25 -0.6 1,733,221 - Xcc-8004.1796.1 0.25 +0.6 1,733,221 - Xcc-8004.1796.1 0.25 +1.5 1,733,394 + Xcc-8004.1796.1 0.49 +1.0 1,733,395 - Xcc-8004.1796.1 0.50 -1.5 1,733,466 + Xcc-8004.1796.1 0.59 +0.6 1,733,631 + Xcc-8004.1796.1 0.82 +1.5 1,734,036 + -0.0 1,734,036 + +0.8 1,734,036 + +2.3 1,734,036 + +1.3 1,734,037 - +0.4 1,734,037 - -0.4 1,734,103 + -0.9 1,734,104 - +0.0 1,734,199 + Xcc-8004.1797.1 0.17 +0.1 1,734,379 - Xcc-8004.1797.1 0.35 -0.4 1,734,391 + Xcc-8004.1797.1 0.37 -0.1 1,734,392 - Xcc-8004.1797.1 0.37 -1.0 1,734,557 - Xcc-8004.1797.1 0.53 -0.3
Or see this region's nucleotide sequence