Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1221.1

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1220.1 and Xcc-8004.1221.1 are separated by 112 nucleotidesXcc-8004.1221.1 and Xcc-8004.1222.1 overlap by 4 nucleotidesXcc-8004.1222.1 and Xcc-8004.1223.1 overlap by 4 nucleotides Xcc-8004.1220.1: Xcc-8004.1220.1 - Protein YicC, at 1,152,555 to 1,153,415 Xcc-8004.1220.1 Xcc-8004.1221.1: Xcc-8004.1221.1 - Ribonuclease PH (EC 2.7.7.56), at 1,153,528 to 1,154,253 Xcc-8004.1221.1 Xcc-8004.1222.1: Xcc-8004.1222.1 - Glyoxalase family protein, at 1,154,250 to 1,154,642 Xcc-8004.1222.1 Xcc-8004.1223.1: Xcc-8004.1223.1 - Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15), at 1,154,639 to 1,155,238 Xcc-8004.1223.1 Position (kb) 1153 1154 1155Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1152.547 kb on - strandat 1152.556 kb on + strandat 1152.798 kb on + strand, within Xcc-8004.1220.1at 1152.798 kb on + strand, within Xcc-8004.1220.1at 1152.798 kb on + strand, within Xcc-8004.1220.1at 1152.798 kb on + strand, within Xcc-8004.1220.1at 1152.798 kb on + strand, within Xcc-8004.1220.1at 1152.798 kb on + strand, within Xcc-8004.1220.1at 1152.799 kb on - strand, within Xcc-8004.1220.1at 1152.799 kb on - strand, within Xcc-8004.1220.1at 1152.923 kb on + strand, within Xcc-8004.1220.1at 1152.923 kb on + strand, within Xcc-8004.1220.1at 1152.923 kb on + strand, within Xcc-8004.1220.1at 1152.924 kb on - strand, within Xcc-8004.1220.1at 1153.448 kb on - strandat 1153.453 kb on - strandat 1153.487 kb on + strandat 1153.723 kb on + strand, within Xcc-8004.1221.1at 1153.936 kb on + strand, within Xcc-8004.1221.1at 1153.936 kb on + strand, within Xcc-8004.1221.1at 1153.936 kb on + strand, within Xcc-8004.1221.1at 1153.936 kb on + strand, within Xcc-8004.1221.1at 1153.937 kb on - strand, within Xcc-8004.1221.1at 1153.937 kb on - strand, within Xcc-8004.1221.1at 1153.937 kb on - strand, within Xcc-8004.1221.1at 1153.937 kb on - strand, within Xcc-8004.1221.1at 1154.031 kb on + strand, within Xcc-8004.1221.1at 1154.031 kb on + strand, within Xcc-8004.1221.1at 1154.032 kb on - strand, within Xcc-8004.1221.1at 1154.036 kb on - strand, within Xcc-8004.1221.1at 1154.313 kb on + strand, within Xcc-8004.1222.1at 1154.313 kb on + strand, within Xcc-8004.1222.1at 1154.314 kb on - strand, within Xcc-8004.1222.1at 1154.494 kb on - strand, within Xcc-8004.1222.1at 1154.623 kb on + strandat 1154.623 kb on + strandat 1154.623 kb on + strandat 1154.624 kb on - strandat 1154.889 kb on - strand, within Xcc-8004.1223.1at 1154.993 kb on + strand, within Xcc-8004.1223.1at 1155.105 kb on - strand, within Xcc-8004.1223.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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1,152,547 - -1.0
1,152,556 + -1.8
1,152,798 + Xcc-8004.1220.1 0.28 +1.8
1,152,798 + Xcc-8004.1220.1 0.28 +1.3
1,152,798 + Xcc-8004.1220.1 0.28 +2.4
1,152,798 + Xcc-8004.1220.1 0.28 -0.9
1,152,798 + Xcc-8004.1220.1 0.28 -0.3
1,152,798 + Xcc-8004.1220.1 0.28 -0.4
1,152,799 - Xcc-8004.1220.1 0.28 -1.5
1,152,799 - Xcc-8004.1220.1 0.28 +1.4
1,152,923 + Xcc-8004.1220.1 0.43 +2.1
1,152,923 + Xcc-8004.1220.1 0.43 +0.1
1,152,923 + Xcc-8004.1220.1 0.43 -0.3
1,152,924 - Xcc-8004.1220.1 0.43 +1.2
1,153,448 - -1.5
1,153,453 - -1.3
1,153,487 + +0.3
1,153,723 + Xcc-8004.1221.1 0.27 -1.3
1,153,936 + Xcc-8004.1221.1 0.56 +0.2
1,153,936 + Xcc-8004.1221.1 0.56 -0.9
1,153,936 + Xcc-8004.1221.1 0.56 -0.6
1,153,936 + Xcc-8004.1221.1 0.56 -0.6
1,153,937 - Xcc-8004.1221.1 0.56 -1.4
1,153,937 - Xcc-8004.1221.1 0.56 -0.4
1,153,937 - Xcc-8004.1221.1 0.56 -0.2
1,153,937 - Xcc-8004.1221.1 0.56 -0.1
1,154,031 + Xcc-8004.1221.1 0.69 -1.3
1,154,031 + Xcc-8004.1221.1 0.69 -1.4
1,154,032 - Xcc-8004.1221.1 0.69 -0.1
1,154,036 - Xcc-8004.1221.1 0.70 +0.6
1,154,313 + Xcc-8004.1222.1 0.16 -1.3
1,154,313 + Xcc-8004.1222.1 0.16 +1.1
1,154,314 - Xcc-8004.1222.1 0.16 +1.8
1,154,494 - Xcc-8004.1222.1 0.62 +1.3
1,154,623 + -3.2
1,154,623 + -0.9
1,154,623 + +0.1
1,154,624 - -0.1
1,154,889 - Xcc-8004.1223.1 0.42 +3.3
1,154,993 + Xcc-8004.1223.1 0.59 +0.9
1,155,105 - Xcc-8004.1223.1 0.78 -0.4

Or see this region's nucleotide sequence