Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19735 and IAI47_19740 overlap by 4 nucleotides IAI47_19740 and IAI47_19745 are separated by 112 nucleotides IAI47_19745 and IAI47_19750 are separated by 294 nucleotides IAI47_19750 and IAI47_19755 are separated by 115 nucleotides
IAI47_19735: IAI47_19735 - sigma-70 family RNA polymerase sigma factor, at 173,105 to 173,653
_19735
IAI47_19740: IAI47_19740 - anti-sigma factor, at 173,650 to 174,327
_19740
IAI47_19745: IAI47_19745 - GNAT family N-acetyltransferase, at 174,440 to 174,880
_19745
IAI47_19750: IAI47_19750 - GNAT family N-acetyltransferase, at 175,175 to 175,723
_19750
IAI47_19755: IAI47_19755 - trehalose-6-phosphate synthase, at 175,839 to 177,263
_19755
Position (kb) 174
175 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 173.442 kb on + strand, within IAI47_19735 at 173.442 kb on + strand, within IAI47_19735 at 173.443 kb on - strand, within IAI47_19735 at 173.443 kb on - strand, within IAI47_19735 at 173.491 kb on + strand, within IAI47_19735 at 173.491 kb on + strand, within IAI47_19735 at 173.491 kb on + strand, within IAI47_19735 at 173.492 kb on - strand, within IAI47_19735 at 173.492 kb on - strand, within IAI47_19735 at 173.492 kb on - strand, within IAI47_19735 at 173.492 kb on - strand, within IAI47_19735 at 173.502 kb on + strand, within IAI47_19735 at 173.502 kb on + strand, within IAI47_19735 at 173.502 kb on + strand, within IAI47_19735 at 173.502 kb on + strand, within IAI47_19735 at 173.502 kb on + strand, within IAI47_19735 at 173.502 kb on + strand, within IAI47_19735 at 173.502 kb on + strand, within IAI47_19735 at 173.502 kb on + strand, within IAI47_19735 at 173.503 kb on - strand, within IAI47_19735 at 173.503 kb on - strand, within IAI47_19735 at 173.503 kb on - strand, within IAI47_19735 at 173.524 kb on + strand, within IAI47_19735 at 173.524 kb on + strand, within IAI47_19735 at 173.524 kb on + strand, within IAI47_19735 at 173.524 kb on + strand, within IAI47_19735 at 173.537 kb on + strand, within IAI47_19735 at 173.538 kb on - strand, within IAI47_19735 at 173.540 kb on + strand, within IAI47_19735 at 173.594 kb on - strand, within IAI47_19735 at 173.643 kb on + strand at 173.643 kb on + strand at 173.643 kb on + strand at 173.644 kb on - strand at 173.644 kb on - strand at 173.644 kb on - strand at 173.644 kb on - strand at 173.649 kb on + strand at 173.649 kb on + strand at 173.649 kb on + strand at 173.649 kb on + strand at 173.649 kb on + strand at 173.650 kb on - strand at 173.650 kb on - strand at 173.650 kb on - strand at 173.650 kb on - strand at 173.690 kb on - strand at 173.690 kb on - strand at 173.733 kb on + strand, within IAI47_19740 at 173.734 kb on - strand, within IAI47_19740 at 173.734 kb on - strand, within IAI47_19740 at 173.734 kb on - strand, within IAI47_19740 at 173.824 kb on - strand, within IAI47_19740 at 173.965 kb on + strand, within IAI47_19740 at 173.965 kb on + strand, within IAI47_19740 at 173.965 kb on + strand, within IAI47_19740 at 173.965 kb on + strand, within IAI47_19740 at 173.966 kb on - strand, within IAI47_19740 at 173.979 kb on + strand, within IAI47_19740 at 173.979 kb on + strand, within IAI47_19740 at 173.980 kb on - strand, within IAI47_19740 at 174.050 kb on + strand, within IAI47_19740 at 174.051 kb on - strand, within IAI47_19740 at 174.051 kb on - strand, within IAI47_19740 at 174.063 kb on + strand, within IAI47_19740 at 174.064 kb on - strand, within IAI47_19740 at 174.118 kb on - strand, within IAI47_19740 at 174.118 kb on - strand, within IAI47_19740 at 174.192 kb on + strand, within IAI47_19740 at 174.192 kb on + strand, within IAI47_19740 at 174.192 kb on + strand, within IAI47_19740 at 174.193 kb on - strand, within IAI47_19740 at 174.193 kb on - strand, within IAI47_19740 at 174.207 kb on - strand, within IAI47_19740 at 174.221 kb on + strand, within IAI47_19740 at 174.222 kb on - strand, within IAI47_19740 at 174.270 kb on + strand at 174.270 kb on + strand at 174.270 kb on + strand at 174.271 kb on - strand at 174.328 kb on + strand at 174.328 kb on + strand at 174.329 kb on - strand at 174.332 kb on + strand at 174.332 kb on + strand at 174.332 kb on + strand at 174.332 kb on + strand at 174.332 kb on + strand at 174.332 kb on + strand at 174.332 kb on + strand at 174.332 kb on + strand at 174.332 kb on + strand at 174.332 kb on + strand at 174.333 kb on - strand at 174.333 kb on - strand at 174.333 kb on - strand at 174.333 kb on - strand at 174.333 kb on - strand at 174.333 kb on - strand at 174.364 kb on + strand at 174.364 kb on + strand at 174.364 kb on + strand at 174.364 kb on + strand at 174.365 kb on - strand at 174.365 kb on - strand at 174.365 kb on - strand at 174.365 kb on - strand at 174.492 kb on + strand, within IAI47_19745 at 174.508 kb on - strand, within IAI47_19745 at 174.528 kb on + strand, within IAI47_19745 at 174.528 kb on + strand, within IAI47_19745 at 174.529 kb on - strand, within IAI47_19745 at 174.529 kb on - strand, within IAI47_19745 at 174.529 kb on - strand, within IAI47_19745 at 174.529 kb on - strand, within IAI47_19745 at 174.529 kb on - strand, within IAI47_19745 at 174.529 kb on - strand, within IAI47_19745 at 174.529 kb on - strand, within IAI47_19745 at 174.550 kb on + strand, within IAI47_19745 at 174.561 kb on + strand, within IAI47_19745 at 174.561 kb on + strand, within IAI47_19745 at 174.561 kb on + strand, within IAI47_19745 at 174.561 kb on + strand, within IAI47_19745 at 174.562 kb on - strand, within IAI47_19745 at 174.562 kb on - strand, within IAI47_19745 at 174.562 kb on - strand, within IAI47_19745 at 174.602 kb on + strand, within IAI47_19745 at 174.602 kb on + strand, within IAI47_19745 at 174.602 kb on + strand, within IAI47_19745 at 174.603 kb on - strand, within IAI47_19745 at 174.603 kb on - strand, within IAI47_19745 at 174.603 kb on - strand, within IAI47_19745 at 174.636 kb on + strand, within IAI47_19745 at 174.637 kb on - strand, within IAI47_19745 at 174.637 kb on - strand, within IAI47_19745 at 174.637 kb on - strand, within IAI47_19745 at 174.645 kb on + strand, within IAI47_19745 at 174.645 kb on + strand, within IAI47_19745 at 174.645 kb on + strand, within IAI47_19745 at 174.646 kb on - strand, within IAI47_19745 at 174.646 kb on - strand, within IAI47_19745 at 174.646 kb on - strand, within IAI47_19745 at 174.670 kb on - strand, within IAI47_19745 at 174.738 kb on + strand, within IAI47_19745 at 174.738 kb on + strand, within IAI47_19745 at 174.738 kb on + strand, within IAI47_19745 at 174.762 kb on + strand, within IAI47_19745 at 174.768 kb on + strand, within IAI47_19745 at 174.768 kb on + strand, within IAI47_19745 at 174.768 kb on + strand, within IAI47_19745 at 174.768 kb on + strand, within IAI47_19745 at 174.769 kb on - strand, within IAI47_19745 at 174.815 kb on - strand, within IAI47_19745 at 174.815 kb on - strand, within IAI47_19745 at 174.815 kb on - strand, within IAI47_19745 at 174.815 kb on - strand, within IAI47_19745 at 174.849 kb on + strand at 174.849 kb on + strand at 174.909 kb on + strand at 174.909 kb on + strand at 174.910 kb on - strand at 174.910 kb on - strand at 174.910 kb on - strand at 174.913 kb on + strand at 174.914 kb on - strand at 174.914 kb on - strand at 174.985 kb on + strand at 174.985 kb on + strand at 174.985 kb on + strand at 174.986 kb on - strand at 174.986 kb on - strand at 174.986 kb on - strand at 174.986 kb on - strand at 174.995 kb on + strand at 174.996 kb on - strand at 174.996 kb on - strand at 175.006 kb on + strand at 175.006 kb on + strand at 175.006 kb on + strand at 175.007 kb on - strand at 175.023 kb on + strand at 175.024 kb on - strand at 175.024 kb on - strand at 175.130 kb on + strand at 175.131 kb on - strand at 175.155 kb on + strand at 175.155 kb on + strand at 175.155 kb on + strand at 175.187 kb on - strand at 175.187 kb on - strand at 175.204 kb on - strand at 175.396 kb on + strand, within IAI47_19750 at 175.396 kb on + strand, within IAI47_19750 at 175.397 kb on - strand, within IAI47_19750 at 175.415 kb on + strand, within IAI47_19750 at 175.416 kb on - strand, within IAI47_19750 at 175.505 kb on + strand, within IAI47_19750 at 175.506 kb on - strand, within IAI47_19750 at 175.514 kb on - strand, within IAI47_19750 at 175.630 kb on + strand, within IAI47_19750 at 175.658 kb on + strand, within IAI47_19750 at 175.659 kb on - strand, within IAI47_19750 at 175.685 kb on + strand at 175.721 kb on + strand at 175.721 kb on + strand at 175.722 kb on - strand at 175.760 kb on + strand at 175.761 kb on - strand at 175.779 kb on - strand at 175.781 kb on + strand at 175.826 kb on + strand at 175.827 kb on - strand at 175.827 kb on - strand at 175.850 kb on + strand at 175.851 kb on - strand at 175.866 kb on - strand at 175.866 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50 remove 173,442 + IAI47_19735 0.61 +0.9 173,442 + IAI47_19735 0.61 +0.1 173,443 - IAI47_19735 0.62 -2.3 173,443 - IAI47_19735 0.62 +0.9 173,491 + IAI47_19735 0.70 +1.2 173,491 + IAI47_19735 0.70 +0.2 173,491 + IAI47_19735 0.70 +0.8 173,492 - IAI47_19735 0.70 -1.2 173,492 - IAI47_19735 0.70 +1.1 173,492 - IAI47_19735 0.70 -0.4 173,492 - IAI47_19735 0.70 +0.3 173,502 + IAI47_19735 0.72 -0.6 173,502 + IAI47_19735 0.72 +0.9 173,502 + IAI47_19735 0.72 -0.7 173,502 + IAI47_19735 0.72 -0.6 173,502 + IAI47_19735 0.72 +0.9 173,502 + IAI47_19735 0.72 -0.2 173,502 + IAI47_19735 0.72 +1.1 173,502 + IAI47_19735 0.72 +0.9 173,503 - IAI47_19735 0.72 -1.4 173,503 - IAI47_19735 0.72 -0.7 173,503 - IAI47_19735 0.72 +0.4 173,524 + IAI47_19735 0.76 +0.4 173,524 + IAI47_19735 0.76 -0.7 173,524 + IAI47_19735 0.76 +2.7 173,524 + IAI47_19735 0.76 +1.5 173,537 + IAI47_19735 0.79 +1.1 173,538 - IAI47_19735 0.79 -1.5 173,540 + IAI47_19735 0.79 -2.1 173,594 - IAI47_19735 0.89 +0.5 173,643 + +1.0 173,643 + -0.8 173,643 + +0.6 173,644 - -0.0 173,644 - -0.4 173,644 - -0.1 173,644 - +0.7 173,649 + -0.4 173,649 + -0.9 173,649 + -0.2 173,649 + -1.3 173,649 + -1.6 173,650 - +0.5 173,650 - -0.5 173,650 - -0.4 173,650 - +0.5 173,690 - +1.5 173,690 - -0.4 173,733 + IAI47_19740 0.12 -2.0 173,734 - IAI47_19740 0.12 +0.2 173,734 - IAI47_19740 0.12 -2.4 173,734 - IAI47_19740 0.12 +2.1 173,824 - IAI47_19740 0.26 +0.0 173,965 + IAI47_19740 0.46 +1.9 173,965 + IAI47_19740 0.46 +0.8 173,965 + IAI47_19740 0.46 +0.7 173,965 + IAI47_19740 0.46 +1.2 173,966 - IAI47_19740 0.47 -0.2 173,979 + IAI47_19740 0.49 -0.3 173,979 + IAI47_19740 0.49 +0.1 173,980 - IAI47_19740 0.49 -1.6 174,050 + IAI47_19740 0.59 -0.8 174,051 - IAI47_19740 0.59 -0.3 174,051 - IAI47_19740 0.59 -0.2 174,063 + IAI47_19740 0.61 +0.1 174,064 - IAI47_19740 0.61 +0.6 174,118 - IAI47_19740 0.69 -1.0 174,118 - IAI47_19740 0.69 -0.4 174,192 + IAI47_19740 0.80 +1.6 174,192 + IAI47_19740 0.80 +0.2 174,192 + IAI47_19740 0.80 +1.8 174,193 - IAI47_19740 0.80 +0.8 174,193 - IAI47_19740 0.80 +0.6 174,207 - IAI47_19740 0.82 +0.8 174,221 + IAI47_19740 0.84 +1.4 174,222 - IAI47_19740 0.84 -0.1 174,270 + +0.8 174,270 + +0.4 174,270 + +0.5 174,271 - -0.2 174,328 + +0.6 174,328 + +0.8 174,329 - +0.2 174,332 + -0.3 174,332 + -0.1 174,332 + -0.0 174,332 + -0.2 174,332 + +0.3 174,332 + +0.7 174,332 + +1.1 174,332 + +0.8 174,332 + +1.7 174,332 + +0.9 174,333 - -0.2 174,333 - +0.1 174,333 - -0.0 174,333 - -1.0 174,333 - +1.7 174,333 - -0.6 174,364 + -0.3 174,364 + +1.9 174,364 + +0.5 174,364 + +0.1 174,365 - -0.8 174,365 - +0.3 174,365 - +0.5 174,365 - +0.0 174,492 + IAI47_19745 0.12 -0.2 174,508 - IAI47_19745 0.15 +0.3 174,528 + IAI47_19745 0.20 +0.3 174,528 + IAI47_19745 0.20 +0.4 174,529 - IAI47_19745 0.20 -1.0 174,529 - IAI47_19745 0.20 -1.8 174,529 - IAI47_19745 0.20 -0.4 174,529 - IAI47_19745 0.20 -1.5 174,529 - IAI47_19745 0.20 +0.4 174,529 - IAI47_19745 0.20 -0.8 174,529 - IAI47_19745 0.20 -0.5 174,550 + IAI47_19745 0.25 -0.1 174,561 + IAI47_19745 0.27 -1.9 174,561 + IAI47_19745 0.27 -0.7 174,561 + IAI47_19745 0.27 -0.2 174,561 + IAI47_19745 0.27 -0.2 174,562 - IAI47_19745 0.28 -2.5 174,562 - IAI47_19745 0.28 +0.4 174,562 - IAI47_19745 0.28 -1.6 174,602 + IAI47_19745 0.37 -1.1 174,602 + IAI47_19745 0.37 -0.2 174,602 + IAI47_19745 0.37 +3.4 174,603 - IAI47_19745 0.37 +0.4 174,603 - IAI47_19745 0.37 -1.2 174,603 - IAI47_19745 0.37 -1.0 174,636 + IAI47_19745 0.44 -1.8 174,637 - IAI47_19745 0.45 -0.6 174,637 - IAI47_19745 0.45 -1.1 174,637 - IAI47_19745 0.45 -0.5 174,645 + IAI47_19745 0.46 +0.2 174,645 + IAI47_19745 0.46 -1.9 174,645 + IAI47_19745 0.46 -1.6 174,646 - IAI47_19745 0.47 +0.6 174,646 - IAI47_19745 0.47 -1.6 174,646 - IAI47_19745 0.47 -0.5 174,670 - IAI47_19745 0.52 -0.9 174,738 + IAI47_19745 0.68 -0.5 174,738 + IAI47_19745 0.68 +0.9 174,738 + IAI47_19745 0.68 +1.0 174,762 + IAI47_19745 0.73 -1.2 174,768 + IAI47_19745 0.74 -0.6 174,768 + IAI47_19745 0.74 +1.6 174,768 + IAI47_19745 0.74 -0.3 174,768 + IAI47_19745 0.74 -0.8 174,769 - IAI47_19745 0.75 -0.4 174,815 - IAI47_19745 0.85 -0.1 174,815 - IAI47_19745 0.85 +0.2 174,815 - IAI47_19745 0.85 +0.9 174,815 - IAI47_19745 0.85 -0.7 174,849 + +0.4 174,849 + +0.4 174,909 + +1.1 174,909 + +0.2 174,910 - -1.5 174,910 - -0.6 174,910 - +0.4 174,913 + +0.2 174,914 - +0.5 174,914 - -0.6 174,985 + +0.0 174,985 + +0.1 174,985 + +0.2 174,986 - +0.2 174,986 - -0.6 174,986 - +1.6 174,986 - +0.4 174,995 + -1.4 174,996 - +0.4 174,996 - -0.9 175,006 + -0.3 175,006 + +0.4 175,006 + -0.4 175,007 - +2.1 175,023 + +0.8 175,024 - -0.6 175,024 - -1.2 175,130 + +1.1 175,131 - +0.5 175,155 + +0.5 175,155 + -1.0 175,155 + +0.3 175,187 - -0.7 175,187 - +0.1 175,204 - -1.3 175,396 + IAI47_19750 0.40 +0.5 175,396 + IAI47_19750 0.40 +0.3 175,397 - IAI47_19750 0.40 +0.8 175,415 + IAI47_19750 0.44 +0.2 175,416 - IAI47_19750 0.44 +1.1 175,505 + IAI47_19750 0.60 +1.1 175,506 - IAI47_19750 0.60 +0.3 175,514 - IAI47_19750 0.62 -0.2 175,630 + IAI47_19750 0.83 -0.7 175,658 + IAI47_19750 0.88 +0.2 175,659 - IAI47_19750 0.88 +0.8 175,685 + +2.9 175,721 + +0.4 175,721 + +0.1 175,722 - -1.3 175,760 + +0.1 175,761 - +3.1 175,779 - +0.8 175,781 + +0.6 175,826 + +1.5 175,827 - +0.4 175,827 - +1.0 175,850 + +2.6 175,851 - +0.8 175,866 - -0.1 175,866 - +0.2
Or see this region's nucleotide sequence