Experiment: m.b. Bacitracin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3446 and HP15_3447 are separated by 193 nucleotides HP15_3447 and HP15_3448 are separated by 3 nucleotides HP15_3448 and HP15_3449 are separated by 18 nucleotides
HP15_3446: HP15_3446 - protein containing a von Willebrand factor type A (vWA) domain, at 3,623,632 to 3,625,746
_3446
HP15_3447: HP15_3447 - two component transcriptional regulator, winged helix family, at 3,625,940 to 3,626,641
_3447
HP15_3448: HP15_3448 - integral membrane sensor signal transduction histidine kinase, at 3,626,645 to 3,628,675
_3448
HP15_3449: HP15_3449 - conserved hypothetical protein, membrane, at 3,628,694 to 3,630,001
_3449
Position (kb)
3626
3627
3628
3629 Strain fitness (log2 ratio)
-1
0
1
2 at 3625.659 kb on + strand at 3625.664 kb on + strand at 3625.667 kb on - strand at 3625.667 kb on - strand at 3625.763 kb on + strand at 3625.763 kb on + strand at 3625.765 kb on + strand at 3625.771 kb on - strand at 3625.781 kb on - strand at 3626.008 kb on - strand at 3626.146 kb on + strand, within HP15_3447 at 3626.304 kb on - strand, within HP15_3447 at 3626.304 kb on - strand, within HP15_3447 at 3626.317 kb on + strand, within HP15_3447 at 3626.443 kb on + strand, within HP15_3447 at 3626.814 kb on - strand at 3626.871 kb on + strand, within HP15_3448 at 3626.906 kb on + strand, within HP15_3448 at 3626.914 kb on - strand, within HP15_3448 at 3627.049 kb on + strand, within HP15_3448 at 3627.063 kb on + strand, within HP15_3448 at 3627.071 kb on - strand, within HP15_3448 at 3627.074 kb on + strand, within HP15_3448 at 3627.096 kb on + strand, within HP15_3448 at 3627.104 kb on - strand, within HP15_3448 at 3627.142 kb on + strand, within HP15_3448 at 3627.142 kb on + strand, within HP15_3448 at 3627.227 kb on - strand, within HP15_3448 at 3627.316 kb on - strand, within HP15_3448 at 3627.383 kb on - strand, within HP15_3448 at 3627.510 kb on + strand, within HP15_3448 at 3627.543 kb on + strand, within HP15_3448 at 3627.560 kb on + strand, within HP15_3448 at 3627.561 kb on - strand, within HP15_3448 at 3627.644 kb on + strand, within HP15_3448 at 3627.725 kb on - strand, within HP15_3448 at 3627.759 kb on - strand, within HP15_3448 at 3627.761 kb on + strand, within HP15_3448 at 3627.773 kb on + strand, within HP15_3448 at 3627.931 kb on - strand, within HP15_3448 at 3628.193 kb on - strand, within HP15_3448 at 3628.340 kb on - strand, within HP15_3448 at 3628.374 kb on - strand, within HP15_3448 at 3628.436 kb on + strand, within HP15_3448 at 3628.444 kb on - strand, within HP15_3448 at 3628.451 kb on + strand, within HP15_3448 at 3628.464 kb on + strand, within HP15_3448 at 3628.472 kb on - strand, within HP15_3448 at 3628.472 kb on - strand, within HP15_3448 at 3628.472 kb on - strand, within HP15_3448 at 3628.527 kb on + strand at 3628.527 kb on + strand at 3628.535 kb on - strand at 3628.540 kb on - strand at 3628.550 kb on - strand at 3628.566 kb on - strand at 3628.627 kb on + strand at 3628.643 kb on - strand at 3628.645 kb on - strand at 3628.694 kb on - strand at 3628.719 kb on + strand at 3628.719 kb on + strand at 3628.727 kb on - strand at 3628.759 kb on - strand at 3628.766 kb on - strand at 3628.829 kb on - strand, within HP15_3449 at 3628.908 kb on + strand, within HP15_3449 at 3628.908 kb on + strand, within HP15_3449 at 3628.916 kb on - strand, within HP15_3449 at 3629.022 kb on + strand, within HP15_3449 at 3629.038 kb on - strand, within HP15_3449 at 3629.123 kb on + strand, within HP15_3449 at 3629.175 kb on + strand, within HP15_3449 at 3629.196 kb on + strand, within HP15_3449 at 3629.196 kb on + strand, within HP15_3449 at 3629.229 kb on + strand, within HP15_3449 at 3629.237 kb on - strand, within HP15_3449 at 3629.247 kb on - strand, within HP15_3449 at 3629.254 kb on - strand, within HP15_3449 at 3629.273 kb on + strand, within HP15_3449 at 3629.535 kb on + strand, within HP15_3449 at 3629.540 kb on + strand, within HP15_3449 at 3629.540 kb on + strand, within HP15_3449 at 3629.548 kb on - strand, within HP15_3449 at 3629.548 kb on - strand, within HP15_3449 at 3629.586 kb on + strand, within HP15_3449 at 3629.603 kb on + strand, within HP15_3449
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Bacitracin 1 mg/ml remove 3,625,659 + -0.4 3,625,664 + -0.1 3,625,667 - -0.0 3,625,667 - +2.1 3,625,763 + -0.4 3,625,763 + -0.9 3,625,765 + -0.3 3,625,771 - +0.5 3,625,781 - -0.6 3,626,008 - +0.6 3,626,146 + HP15_3447 0.29 -0.1 3,626,304 - HP15_3447 0.52 +0.9 3,626,304 - HP15_3447 0.52 +0.8 3,626,317 + HP15_3447 0.54 -0.6 3,626,443 + HP15_3447 0.72 -0.1 3,626,814 - +0.6 3,626,871 + HP15_3448 0.11 -0.2 3,626,906 + HP15_3448 0.13 +0.3 3,626,914 - HP15_3448 0.13 +0.7 3,627,049 + HP15_3448 0.20 +0.1 3,627,063 + HP15_3448 0.21 +0.5 3,627,071 - HP15_3448 0.21 -0.0 3,627,074 + HP15_3448 0.21 +0.9 3,627,096 + HP15_3448 0.22 +0.0 3,627,104 - HP15_3448 0.23 +0.7 3,627,142 + HP15_3448 0.24 +0.5 3,627,142 + HP15_3448 0.24 +0.4 3,627,227 - HP15_3448 0.29 +0.6 3,627,316 - HP15_3448 0.33 -0.2 3,627,383 - HP15_3448 0.36 -0.1 3,627,510 + HP15_3448 0.43 +0.6 3,627,543 + HP15_3448 0.44 +0.1 3,627,560 + HP15_3448 0.45 +0.1 3,627,561 - HP15_3448 0.45 +0.7 3,627,644 + HP15_3448 0.49 +1.5 3,627,725 - HP15_3448 0.53 +0.3 3,627,759 - HP15_3448 0.55 -0.0 3,627,761 + HP15_3448 0.55 +0.7 3,627,773 + HP15_3448 0.56 +2.3 3,627,931 - HP15_3448 0.63 -0.5 3,628,193 - HP15_3448 0.76 +1.2 3,628,340 - HP15_3448 0.83 +1.0 3,628,374 - HP15_3448 0.85 +0.4 3,628,436 + HP15_3448 0.88 -0.7 3,628,444 - HP15_3448 0.89 +0.4 3,628,451 + HP15_3448 0.89 -0.0 3,628,464 + HP15_3448 0.90 +0.3 3,628,472 - HP15_3448 0.90 -0.0 3,628,472 - HP15_3448 0.90 +1.3 3,628,472 - HP15_3448 0.90 +0.5 3,628,527 + +0.9 3,628,527 + +0.6 3,628,535 - +0.6 3,628,540 - +0.5 3,628,550 - +0.1 3,628,566 - +0.1 3,628,627 + +0.4 3,628,643 - +1.1 3,628,645 - +0.5 3,628,694 - +0.7 3,628,719 + +0.7 3,628,719 + -0.0 3,628,727 - -0.9 3,628,759 - -0.1 3,628,766 - +0.0 3,628,829 - HP15_3449 0.10 +0.5 3,628,908 + HP15_3449 0.16 +0.1 3,628,908 + HP15_3449 0.16 +0.3 3,628,916 - HP15_3449 0.17 +0.1 3,629,022 + HP15_3449 0.25 -0.2 3,629,038 - HP15_3449 0.26 +0.5 3,629,123 + HP15_3449 0.33 +0.2 3,629,175 + HP15_3449 0.37 +0.3 3,629,196 + HP15_3449 0.38 +0.3 3,629,196 + HP15_3449 0.38 -0.1 3,629,229 + HP15_3449 0.41 -0.1 3,629,237 - HP15_3449 0.42 +0.0 3,629,247 - HP15_3449 0.42 -0.4 3,629,254 - HP15_3449 0.43 -0.1 3,629,273 + HP15_3449 0.44 +0.7 3,629,535 + HP15_3449 0.64 +0.2 3,629,540 + HP15_3449 0.65 -0.3 3,629,540 + HP15_3449 0.65 -1.0 3,629,548 - HP15_3449 0.65 +1.0 3,629,548 - HP15_3449 0.65 +0.1 3,629,586 + HP15_3449 0.68 +0.9 3,629,603 + HP15_3449 0.69 -0.1
Or see this region's nucleotide sequence