Experiment: m.b. Bacitracin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3416 and HP15_3417 overlap by 2 nucleotides HP15_3417 and HP15_3418 are separated by 125 nucleotides HP15_3418 and HP15_3419 are separated by 17 nucleotides HP15_3419 and HP15_3420 are separated by 128 nucleotides
HP15_3416: HP15_3416 - conserved hypothetical protein, at 3,591,027 to 3,592,301
_3416
HP15_3417: HP15_3417 - RNA methyltransferase, TrmH family, group 1, at 3,592,300 to 3,593,028
_3417
HP15_3418: HP15_3418 - D-amino acid dehydrogenase small subunit, at 3,593,154 to 3,594,425
_3418
HP15_3419: HP15_3419 - polyphosphate kinase 2, predicted, at 3,594,443 to 3,595,276
_3419
HP15_3420: HP15_3420 - hydrolase, TatD family, at 3,595,405 to 3,596,214
_3420
Position (kb)
3593
3594
3595 Strain fitness (log2 ratio)
-2
-1
0
1 at 3592.165 kb on - strand, within HP15_3416 at 3592.258 kb on - strand at 3592.272 kb on + strand at 3592.311 kb on - strand at 3592.358 kb on + strand at 3592.358 kb on + strand at 3592.387 kb on + strand, within HP15_3417 at 3592.411 kb on + strand, within HP15_3417 at 3592.441 kb on + strand, within HP15_3417 at 3592.467 kb on - strand, within HP15_3417 at 3592.516 kb on - strand, within HP15_3417 at 3592.571 kb on + strand, within HP15_3417 at 3592.571 kb on + strand, within HP15_3417 at 3592.571 kb on + strand, within HP15_3417 at 3592.579 kb on - strand, within HP15_3417 at 3592.617 kb on - strand, within HP15_3417 at 3592.627 kb on - strand, within HP15_3417 at 3592.664 kb on - strand, within HP15_3417 at 3592.684 kb on + strand, within HP15_3417 at 3592.728 kb on - strand, within HP15_3417 at 3592.817 kb on + strand, within HP15_3417 at 3592.840 kb on + strand, within HP15_3417 at 3592.847 kb on + strand, within HP15_3417 at 3592.863 kb on + strand, within HP15_3417 at 3592.866 kb on - strand, within HP15_3417 at 3592.912 kb on + strand, within HP15_3417 at 3592.945 kb on - strand, within HP15_3417 at 3592.953 kb on + strand, within HP15_3417 at 3592.993 kb on - strand at 3593.022 kb on - strand at 3593.034 kb on + strand at 3593.052 kb on - strand at 3593.066 kb on - strand at 3593.104 kb on - strand at 3593.258 kb on + strand at 3593.297 kb on + strand, within HP15_3418 at 3593.358 kb on + strand, within HP15_3418 at 3593.479 kb on - strand, within HP15_3418 at 3593.512 kb on + strand, within HP15_3418 at 3593.547 kb on + strand, within HP15_3418 at 3593.596 kb on + strand, within HP15_3418 at 3593.617 kb on - strand, within HP15_3418 at 3593.641 kb on + strand, within HP15_3418 at 3593.683 kb on - strand, within HP15_3418 at 3593.774 kb on + strand, within HP15_3418 at 3593.969 kb on + strand, within HP15_3418 at 3594.006 kb on + strand, within HP15_3418 at 3594.036 kb on + strand, within HP15_3418 at 3594.041 kb on + strand, within HP15_3418 at 3594.049 kb on - strand, within HP15_3418 at 3594.093 kb on + strand, within HP15_3418 at 3594.120 kb on + strand, within HP15_3418 at 3594.123 kb on - strand, within HP15_3418 at 3594.205 kb on + strand, within HP15_3418 at 3594.243 kb on - strand, within HP15_3418 at 3594.264 kb on + strand, within HP15_3418 at 3594.267 kb on - strand, within HP15_3418 at 3594.267 kb on - strand, within HP15_3418 at 3594.272 kb on - strand, within HP15_3418 at 3594.272 kb on - strand, within HP15_3418 at 3594.272 kb on - strand, within HP15_3418 at 3594.285 kb on - strand, within HP15_3418 at 3594.333 kb on - strand at 3594.346 kb on + strand at 3594.348 kb on + strand at 3594.540 kb on + strand, within HP15_3419 at 3594.566 kb on + strand, within HP15_3419 at 3594.574 kb on - strand, within HP15_3419 at 3594.719 kb on + strand, within HP15_3419 at 3594.763 kb on + strand, within HP15_3419 at 3594.784 kb on + strand, within HP15_3419 at 3594.848 kb on + strand, within HP15_3419 at 3594.873 kb on + strand, within HP15_3419 at 3594.939 kb on - strand, within HP15_3419 at 3594.939 kb on - strand, within HP15_3419 at 3595.050 kb on + strand, within HP15_3419 at 3595.058 kb on - strand, within HP15_3419 at 3595.107 kb on + strand, within HP15_3419 at 3595.107 kb on + strand, within HP15_3419 at 3595.115 kb on - strand, within HP15_3419 at 3595.115 kb on - strand, within HP15_3419 at 3595.115 kb on - strand, within HP15_3419 at 3595.115 kb on - strand, within HP15_3419 at 3595.130 kb on - strand, within HP15_3419 at 3595.148 kb on + strand, within HP15_3419 at 3595.153 kb on + strand, within HP15_3419 at 3595.311 kb on - strand at 3595.390 kb on + strand at 3595.398 kb on - strand at 3595.398 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Bacitracin 1 mg/ml remove 3,592,165 - HP15_3416 0.89 +0.7 3,592,258 - +1.0 3,592,272 + -0.2 3,592,311 - +0.6 3,592,358 + -0.5 3,592,358 + -0.2 3,592,387 + HP15_3417 0.12 -0.4 3,592,411 + HP15_3417 0.15 +0.0 3,592,441 + HP15_3417 0.19 +0.0 3,592,467 - HP15_3417 0.23 +0.1 3,592,516 - HP15_3417 0.30 +0.6 3,592,571 + HP15_3417 0.37 +1.1 3,592,571 + HP15_3417 0.37 +0.0 3,592,571 + HP15_3417 0.37 -0.3 3,592,579 - HP15_3417 0.38 +0.6 3,592,617 - HP15_3417 0.43 +0.3 3,592,627 - HP15_3417 0.45 -0.0 3,592,664 - HP15_3417 0.50 -0.4 3,592,684 + HP15_3417 0.53 -0.4 3,592,728 - HP15_3417 0.59 +0.0 3,592,817 + HP15_3417 0.71 +0.8 3,592,840 + HP15_3417 0.74 -0.2 3,592,847 + HP15_3417 0.75 -0.2 3,592,863 + HP15_3417 0.77 -0.4 3,592,866 - HP15_3417 0.78 -0.0 3,592,912 + HP15_3417 0.84 +0.5 3,592,945 - HP15_3417 0.88 +0.5 3,592,953 + HP15_3417 0.90 -0.2 3,592,993 - -0.2 3,593,022 - -0.5 3,593,034 + -0.3 3,593,052 - -1.1 3,593,066 - +0.1 3,593,104 - -0.2 3,593,258 + -0.1 3,593,297 + HP15_3418 0.11 -0.1 3,593,358 + HP15_3418 0.16 -0.0 3,593,479 - HP15_3418 0.26 -0.1 3,593,512 + HP15_3418 0.28 +0.0 3,593,547 + HP15_3418 0.31 -0.3 3,593,596 + HP15_3418 0.35 -0.3 3,593,617 - HP15_3418 0.36 +0.7 3,593,641 + HP15_3418 0.38 -1.9 3,593,683 - HP15_3418 0.42 -0.6 3,593,774 + HP15_3418 0.49 +0.1 3,593,969 + HP15_3418 0.64 +0.6 3,594,006 + HP15_3418 0.67 +0.0 3,594,036 + HP15_3418 0.69 -0.6 3,594,041 + HP15_3418 0.70 +0.6 3,594,049 - HP15_3418 0.70 -0.2 3,594,093 + HP15_3418 0.74 +0.6 3,594,120 + HP15_3418 0.76 -0.9 3,594,123 - HP15_3418 0.76 -0.0 3,594,205 + HP15_3418 0.83 +0.4 3,594,243 - HP15_3418 0.86 -0.2 3,594,264 + HP15_3418 0.87 -0.4 3,594,267 - HP15_3418 0.88 -0.1 3,594,267 - HP15_3418 0.88 -0.8 3,594,272 - HP15_3418 0.88 -0.1 3,594,272 - HP15_3418 0.88 -0.8 3,594,272 - HP15_3418 0.88 -0.5 3,594,285 - HP15_3418 0.89 -1.0 3,594,333 - +1.2 3,594,346 + +0.2 3,594,348 + -0.2 3,594,540 + HP15_3419 0.12 -0.3 3,594,566 + HP15_3419 0.15 -0.2 3,594,574 - HP15_3419 0.16 +0.6 3,594,719 + HP15_3419 0.33 +0.9 3,594,763 + HP15_3419 0.38 -0.2 3,594,784 + HP15_3419 0.41 -0.8 3,594,848 + HP15_3419 0.49 +0.1 3,594,873 + HP15_3419 0.52 +0.3 3,594,939 - HP15_3419 0.59 -0.4 3,594,939 - HP15_3419 0.59 -0.3 3,595,050 + HP15_3419 0.73 +0.0 3,595,058 - HP15_3419 0.74 +1.0 3,595,107 + HP15_3419 0.80 -0.1 3,595,107 + HP15_3419 0.80 -0.1 3,595,115 - HP15_3419 0.81 -0.1 3,595,115 - HP15_3419 0.81 +0.7 3,595,115 - HP15_3419 0.81 -0.2 3,595,115 - HP15_3419 0.81 -0.2 3,595,130 - HP15_3419 0.82 +0.4 3,595,148 + HP15_3419 0.85 -0.5 3,595,153 + HP15_3419 0.85 -0.1 3,595,311 - +0.0 3,595,390 + +0.1 3,595,398 - +0.5 3,595,398 - -0.3
Or see this region's nucleotide sequence