Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c22570

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
2,338,633	-		PGA1_c22550	0.44	+1.1
2,338,767	-		PGA1_c22550	0.55	-0.3
2,338,781	+		PGA1_c22550	0.57	+0.3
2,338,787	-		PGA1_c22550	0.57	+0.3
2,338,833	-		PGA1_c22550	0.61	+0.3
2,338,902	+		PGA1_c22550	0.67	+0.5
2,338,921	-		PGA1_c22550	0.69	+0.3
2,338,924	+		PGA1_c22550	0.69	+0.1
2,338,937	+		PGA1_c22550	0.70	+0.0
2,338,946	+		PGA1_c22550	0.71	+0.4
2,338,952	-		PGA1_c22550	0.72	+1.8
2,338,954	-		PGA1_c22550	0.72	+0.1
2,339,061	+		PGA1_c22550	0.81	+0.4
2,339,061	+		PGA1_c22550	0.81	-1.3
2,339,061	+		PGA1_c22550	0.81	-0.3
2,339,077	-		PGA1_c22550	0.83	-1.2
2,339,078	+		PGA1_c22550	0.83	-0.6
2,339,078	+		PGA1_c22550	0.83	+0.1
2,339,107	+		PGA1_c22550	0.85	-1.6
2,339,107	+		PGA1_c22550	0.85	+0.7
2,339,107	+		PGA1_c22550	0.85	-0.3
2,339,115	-		PGA1_c22550	0.86	-2.4
2,339,139	+		PGA1_c22550	0.88	-0.6
2,339,139	+		PGA1_c22550	0.88	-0.1
2,339,139	+		PGA1_c22550	0.88	+1.3
2,339,147	-		PGA1_c22550	0.89	+0.8
2,339,213	-				+0.7
2,339,249	+				-0.0
2,339,371	+		PGA1_c22560	0.15	+1.3
2,339,372	+		PGA1_c22560	0.15	-0.1
2,339,380	-		PGA1_c22560	0.19	+0.5
2,339,381	-		PGA1_c22560	0.19	+0.2
2,339,391	+		PGA1_c22560	0.24	+0.2
2,339,391	+		PGA1_c22560	0.24	+1.1
2,339,391	+		PGA1_c22560	0.24	+0.1
2,339,391	+		PGA1_c22560	0.24	-0.6
2,339,391	+		PGA1_c22560	0.24	-0.2
2,339,391	+		PGA1_c22560	0.24	+0.6
2,339,391	+		PGA1_c22560	0.24	+0.6
2,339,399	-		PGA1_c22560	0.27	-0.0
2,339,399	-		PGA1_c22560	0.27	-0.7
2,339,399	-		PGA1_c22560	0.27	+0.3
2,339,399	-		PGA1_c22560	0.27	+0.0
2,339,399	-		PGA1_c22560	0.27	+0.5
2,339,459	+		PGA1_c22560	0.54	-0.5
2,339,465	+		PGA1_c22560	0.56	-0.5
2,339,465	+		PGA1_c22560	0.56	+0.2
2,339,469	+		PGA1_c22560	0.58	-0.4
2,339,513	+		PGA1_c22560	0.77	+0.2
2,339,521	-		PGA1_c22560	0.81	+1.4
2,339,526	+		PGA1_c22560	0.83	-0.4
2,339,577	+				-0.4
2,339,585	-				+0.3
2,339,593	+				-0.5
2,339,649	-				+0.4
2,339,708	+				+0.6
2,339,772	+				-1.2
2,339,824	-		PGA1_c22570	0.11	-0.5
2,339,877	-		PGA1_c22570	0.14	-1.5
2,339,904	+		PGA1_c22570	0.16	-0.1
2,339,904	+		PGA1_c22570	0.16	+0.7
2,340,040	+		PGA1_c22570	0.24	-0.0
2,340,090	+		PGA1_c22570	0.27	-0.6
2,340,116	-		PGA1_c22570	0.28	+0.2
2,340,219	-		PGA1_c22570	0.34	-1.8
2,340,242	+		PGA1_c22570	0.36	-0.3
2,340,250	+		PGA1_c22570	0.36	+0.4
2,340,253	-		PGA1_c22570	0.36	-0.3
2,340,344	+		PGA1_c22570	0.42	+0.4
2,340,516	+		PGA1_c22570	0.52	-0.3
2,340,519	-		PGA1_c22570	0.52	-0.1
2,340,569	+		PGA1_c22570	0.55	+0.4
2,340,591	+		PGA1_c22570	0.56	-0.7
2,340,591	+		PGA1_c22570	0.56	-1.3
2,340,592	-		PGA1_c22570	0.56	+0.2
2,340,592	-		PGA1_c22570	0.56	-0.0
2,340,592	-		PGA1_c22570	0.56	-0.3
2,340,592	-		PGA1_c22570	0.56	-0.2
2,340,596	+		PGA1_c22570	0.56	-0.2
2,340,599	-		PGA1_c22570	0.57	-1.2
2,340,726	+		PGA1_c22570	0.64	+0.2
2,340,736	-		PGA1_c22570	0.65	+0.3
2,340,766	+		PGA1_c22570	0.66	+1.0
2,340,774	-		PGA1_c22570	0.67	-0.9
2,340,774	-		PGA1_c22570	0.67	+0.4
2,340,776	+		PGA1_c22570	0.67	-1.4
2,340,776	+		PGA1_c22570	0.67	-0.9
2,340,776	+		PGA1_c22570	0.67	-1.0
2,340,776	+		PGA1_c22570	0.67	+0.5
2,340,806	-		PGA1_c22570	0.69	+0.2
2,340,855	+		PGA1_c22570	0.72	-0.1
2,340,879	-		PGA1_c22570	0.73	-0.1
2,340,964	-		PGA1_c22570	0.78	-0.5
2,340,983	-		PGA1_c22570	0.79	-1.1
2,341,008	-		PGA1_c22570	0.81	+1.0
2,341,013	-		PGA1_c22570	0.81	-0.1
2,341,049	-		PGA1_c22570	0.83	-0.3
2,341,049	-		PGA1_c22570	0.83	-0.8
2,341,051	+		PGA1_c22570	0.83	+0.6
2,341,051	+		PGA1_c22570	0.83	+0.1
2,341,051	+		PGA1_c22570	0.83	-1.8
2,341,051	+		PGA1_c22570	0.83	-0.1
2,341,051	+		PGA1_c22570	0.83	+0.2
2,341,051	+		PGA1_c22570	0.83	+0.1
2,341,051	+		PGA1_c22570	0.83	-0.1
2,341,051	+		PGA1_c22570	0.83	+0.4
2,341,051	+		PGA1_c22570	0.83	+1.6
2,341,051	+		PGA1_c22570	0.83	-0.4
2,341,051	+		PGA1_c22570	0.83	-0.2
2,341,051	+		PGA1_c22570	0.83	+0.5
2,341,051	+		PGA1_c22570	0.83	-0.8
2,341,051	+		PGA1_c22570	0.83	-0.2
2,341,051	+		PGA1_c22570	0.83	-0.6
2,341,051	+		PGA1_c22570	0.83	-0.1
2,341,051	+		PGA1_c22570	0.83	-0.0
2,341,051	+		PGA1_c22570	0.83	+0.1
2,341,051	+		PGA1_c22570	0.83	-0.7
2,341,051	+		PGA1_c22570	0.83	+0.6
2,341,051	+		PGA1_c22570	0.83	-0.6
2,341,056	+		PGA1_c22570	0.83	+0.7
2,341,059	-		PGA1_c22570	0.83	-0.8
2,341,059	-		PGA1_c22570	0.83	-0.1
2,341,059	-		PGA1_c22570	0.83	+0.4
2,341,059	-		PGA1_c22570	0.83	-0.9
2,341,059	-		PGA1_c22570	0.83	+0.3
2,341,059	-		PGA1_c22570	0.83	-1.1
2,341,059	-		PGA1_c22570	0.83	-0.6
2,341,059	-		PGA1_c22570	0.83	-0.8
2,341,059	-		PGA1_c22570	0.83	-0.2
2,341,059	-		PGA1_c22570	0.83	+0.1
2,341,059	-		PGA1_c22570	0.83	-0.2
2,341,059	-		PGA1_c22570	0.83	-0.5
2,341,059	-		PGA1_c22570	0.83	-0.6
2,341,064	-		PGA1_c22570	0.84	+0.3
2,341,224	+				+0.1
2,341,255	+				-0.1
2,341,400	-				-0.4
2,341,416	+				+1.0
2,341,416	+				+0.2
2,341,416	+				+0.6
2,341,416	+				-0.7
2,341,416	+				+0.5
2,341,416	+				+0.1
2,341,416	+				-0.2
2,341,424	-				-0.1
2,341,424	-				+0.4
2,341,424	-				+1.2
2,341,424	-				-0.0
2,341,424	-				+0.3
2,341,424	-				+0.9
2,341,424	-				-0.9
2,341,424	-				-2.2
2,341,424	-				-0.2
2,341,466	-				+0.2
2,341,466	-				+0.4
2,341,474	+				-0.7
2,341,482	-				-0.3
2,341,512	-				+0.6
2,341,535	+				+0.3
2,341,539	-				+0.8
2,341,543	-				-0.3
2,341,577	+				+0.2
2,341,577	+				-0.7
2,341,577	+				-1.2
2,341,585	-				+0.4
2,341,589	+				-2.2
2,341,589	+				-0.2
2,341,597	-				-2.3
2,341,610	+				-0.0
2,341,610	+				-0.3
2,341,633	-				-1.3
2,341,689	+		PGA1_c22580	0.12	+0.1
2,341,698	+		PGA1_c22580	0.13	+0.6
2,341,700	-		PGA1_c22580	0.13	+0.2
2,341,705	-		PGA1_c22580	0.14	+0.6
2,341,751	-		PGA1_c22580	0.17	-0.7
2,341,779	-		PGA1_c22580	0.20	+0.8
2,341,779	-		PGA1_c22580	0.20	-0.2
2,341,779	-		PGA1_c22580	0.20	-0.2
2,341,818	+		PGA1_c22580	0.23	+0.5
2,341,823	+		PGA1_c22580	0.23	-0.1
2,341,826	-		PGA1_c22580	0.23	+0.8
2,341,826	-		PGA1_c22580	0.23	+1.1
2,341,836	+		PGA1_c22580	0.24	-0.7
2,341,890	-		PGA1_c22580	0.29	+0.8
2,341,932	+		PGA1_c22580	0.32	+0.5
2,341,940	-		PGA1_c22580	0.33	-1.1
2,341,940	-		PGA1_c22580	0.33	-0.6
2,341,942	+		PGA1_c22580	0.33	-0.1
2,341,969	+		PGA1_c22580	0.35	-0.1
2,341,996	-		PGA1_c22580	0.37	-0.8
2,342,059	+		PGA1_c22580	0.42	+0.9
2,342,065	+		PGA1_c22580	0.43	-0.7
2,342,067	-		PGA1_c22580	0.43	-0.6
2,342,068	-		PGA1_c22580	0.43	+0.6
2,342,068	-		PGA1_c22580	0.43	+0.1
2,342,171	-		PGA1_c22580	0.51	-0.3
2,342,179	+		PGA1_c22580	0.52	-0.4
2,342,186	+		PGA1_c22580	0.52	+0.6
2,342,219	+		PGA1_c22580	0.55	+0.8
2,342,239	+		PGA1_c22580	0.57	-0.7
2,342,239	+		PGA1_c22580	0.57	+0.7
2,342,272	-		PGA1_c22580	0.59	+0.7
2,342,290	+		PGA1_c22580	0.61	+0.2
2,342,290	+		PGA1_c22580	0.61	-0.6
2,342,295	+		PGA1_c22580	0.61	-0.8