Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18905

Experiment: Chloride 1000 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18895 and BWI76_RS18900 overlap by 1 nucleotidesBWI76_RS18900 and BWI76_RS18905 are separated by 74 nucleotidesBWI76_RS18905 and BWI76_RS18910 are separated by 287 nucleotides BWI76_RS18895: BWI76_RS18895 - nitrogenase cofactor biosynthesis protein NifB, at 3,918,844 to 3,920,250 _RS18895 BWI76_RS18900: BWI76_RS18900 - protein NifQ, at 3,920,250 to 3,920,753 _RS18900 BWI76_RS18905: BWI76_RS18905 - putrescine/spermidine ABC transporter, at 3,920,828 to 3,922,186 _RS18905 BWI76_RS18910: BWI76_RS18910 - LysR family transcriptional regulator, at 3,922,474 to 3,923,364 _RS18910 Position (kb) 3920 3921 3922 3923Strain fitness (log2 ratio) -1 0 1at 3920.014 kb on - strand, within BWI76_RS18895at 3920.081 kb on - strand, within BWI76_RS18895at 3920.334 kb on - strand, within BWI76_RS18900at 3920.451 kb on + strand, within BWI76_RS18900at 3920.565 kb on - strand, within BWI76_RS18900at 3920.846 kb on - strandat 3921.562 kb on - strand, within BWI76_RS18905at 3921.880 kb on + strand, within BWI76_RS18905at 3921.903 kb on - strand, within BWI76_RS18905at 3922.283 kb on + strandat 3922.490 kb on + strandat 3922.503 kb on + strandat 3922.586 kb on + strand, within BWI76_RS18910at 3922.673 kb on + strand, within BWI76_RS18910at 3922.681 kb on - strand, within BWI76_RS18910at 3922.683 kb on + strand, within BWI76_RS18910at 3922.696 kb on - strand, within BWI76_RS18910at 3922.899 kb on + strand, within BWI76_RS18910at 3923.095 kb on + strand, within BWI76_RS18910

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 1000 mM
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3,920,014 - BWI76_RS18895 0.83 -0.5
3,920,081 - BWI76_RS18895 0.88 -1.1
3,920,334 - BWI76_RS18900 0.17 -0.3
3,920,451 + BWI76_RS18900 0.40 +0.2
3,920,565 - BWI76_RS18900 0.62 -0.4
3,920,846 - -1.2
3,921,562 - BWI76_RS18905 0.54 -1.2
3,921,880 + BWI76_RS18905 0.77 -0.3
3,921,903 - BWI76_RS18905 0.79 -0.2
3,922,283 + +0.2
3,922,490 + +0.3
3,922,503 + +0.2
3,922,586 + BWI76_RS18910 0.13 +0.4
3,922,673 + BWI76_RS18910 0.22 +0.3
3,922,681 - BWI76_RS18910 0.23 -0.2
3,922,683 + BWI76_RS18910 0.23 -0.1
3,922,696 - BWI76_RS18910 0.25 +0.8
3,922,899 + BWI76_RS18910 0.48 -0.0
3,923,095 + BWI76_RS18910 0.70 -1.0

Or see this region's nucleotide sequence