Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3047

Experiment: MoLS4 with Chlorate 3.125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3046 and DvMF_3047 are separated by 378 nucleotidesDvMF_3047 and DvMF_R0079 are separated by 142 nucleotidesDvMF_R0079 and DvMF_3048 are separated by 364 nucleotides DvMF_3046: DvMF_3046 - cobalbumin biosynthesis protein (RefSeq), at 3,843,512 to 3,844,156 _3046 DvMF_3047: DvMF_3047 - hypothetical protein (RefSeq), at 3,844,535 to 3,845,275 _3047 DvMF_R0079: DvMF_R0079 - tRNA-Leu (RefSeq), at 3,845,418 to 3,845,504 _R0079 DvMF_3048: DvMF_3048 - hypothetical protein (RefSeq), at 3,845,869 to 3,846,501 _3048 Position (kb) 3844 3845 3846Strain fitness (log2 ratio) -3 -2 -1 0 1at 3843.623 kb on + strand, within DvMF_3046at 3843.814 kb on - strand, within DvMF_3046at 3843.885 kb on + strand, within DvMF_3046at 3843.927 kb on + strand, within DvMF_3046at 3844.298 kb on - strandat 3844.449 kb on - strandat 3844.522 kb on - strandat 3844.626 kb on + strand, within DvMF_3047at 3844.626 kb on + strand, within DvMF_3047at 3844.764 kb on - strand, within DvMF_3047at 3844.788 kb on + strand, within DvMF_3047at 3844.886 kb on + strand, within DvMF_3047at 3844.903 kb on + strand, within DvMF_3047at 3845.083 kb on - strand, within DvMF_3047at 3845.158 kb on + strand, within DvMF_3047at 3845.166 kb on + strand, within DvMF_3047at 3845.166 kb on - strand, within DvMF_3047at 3845.171 kb on + strand, within DvMF_3047at 3845.527 kb on - strandat 3845.651 kb on - strandat 3845.689 kb on + strandat 3845.727 kb on + strandat 3845.771 kb on - strandat 3845.863 kb on + strandat 3845.950 kb on - strand, within DvMF_3048at 3845.969 kb on + strand, within DvMF_3048at 3846.043 kb on - strand, within DvMF_3048

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorate 3.125 mM
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3,843,623 + DvMF_3046 0.17 -2.8
3,843,814 - DvMF_3046 0.47 -0.7
3,843,885 + DvMF_3046 0.58 -3.0
3,843,927 + DvMF_3046 0.64 -0.1
3,844,298 - -0.3
3,844,449 - -0.1
3,844,522 - -0.6
3,844,626 + DvMF_3047 0.12 -0.1
3,844,626 + DvMF_3047 0.12 -0.2
3,844,764 - DvMF_3047 0.31 -0.4
3,844,788 + DvMF_3047 0.34 -0.1
3,844,886 + DvMF_3047 0.47 -0.3
3,844,903 + DvMF_3047 0.50 +0.3
3,845,083 - DvMF_3047 0.74 -0.0
3,845,158 + DvMF_3047 0.84 +0.8
3,845,166 + DvMF_3047 0.85 +0.0
3,845,166 - DvMF_3047 0.85 +0.2
3,845,171 + DvMF_3047 0.86 -0.5
3,845,527 - +0.0
3,845,651 - -0.6
3,845,689 + +0.8
3,845,727 + -0.9
3,845,771 - +0.1
3,845,863 + -0.2
3,845,950 - DvMF_3048 0.13 -0.4
3,845,969 + DvMF_3048 0.16 +0.2
3,846,043 - DvMF_3048 0.27 -0.5

Or see this region's nucleotide sequence