Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2891

Experiment: MoLS4 with Chlorate 3.125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2889 and DvMF_2890 are separated by 117 nucleotidesDvMF_2890 and DvMF_2891 overlap by 11 nucleotidesDvMF_2891 and DvMF_2892 are separated by 881 nucleotides DvMF_2889: DvMF_2889 - aspartate aminotransferase (RefSeq), at 3,645,370 to 3,646,554 _2889 DvMF_2890: DvMF_2890 - hypothetical protein (RefSeq), at 3,646,672 to 3,646,905 _2890 DvMF_2891: DvMF_2891 - 5-enolpyruvylshikimate-3-phosphate synthase-like protein (RefSeq), at 3,646,895 to 3,648,772 _2891 DvMF_2892: DvMF_2892 - adenylylsulfate reductase, beta subunit (RefSeq), at 3,649,654 to 3,650,157 _2892 Position (kb) 3646 3647 3648 3649Strain fitness (log2 ratio) -1 0 1 2 3at 3646.171 kb on + strand, within DvMF_2889at 3646.235 kb on + strand, within DvMF_2889at 3646.283 kb on + strand, within DvMF_2889at 3646.283 kb on + strand, within DvMF_2889at 3646.465 kb on - strandat 3646.979 kb on + strandat 3647.063 kb on - strandat 3647.106 kb on - strand, within DvMF_2891at 3647.242 kb on - strand, within DvMF_2891at 3647.442 kb on - strand, within DvMF_2891at 3647.545 kb on + strand, within DvMF_2891at 3647.724 kb on + strand, within DvMF_2891at 3647.744 kb on + strand, within DvMF_2891at 3647.747 kb on - strand, within DvMF_2891at 3647.897 kb on + strand, within DvMF_2891at 3647.962 kb on - strand, within DvMF_2891at 3648.298 kb on + strand, within DvMF_2891at 3648.306 kb on - strand, within DvMF_2891at 3648.507 kb on - strand, within DvMF_2891at 3648.519 kb on + strand, within DvMF_2891at 3648.646 kb on + strandat 3648.884 kb on - strandat 3648.887 kb on + strandat 3649.016 kb on + strandat 3649.361 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorate 3.125 mM
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3,646,171 + DvMF_2889 0.68 -0.5
3,646,235 + DvMF_2889 0.73 -0.6
3,646,283 + DvMF_2889 0.77 -0.1
3,646,283 + DvMF_2889 0.77 -0.2
3,646,465 - -0.2
3,646,979 + +0.6
3,647,063 - +1.0
3,647,106 - DvMF_2891 0.11 +0.4
3,647,242 - DvMF_2891 0.18 +3.0
3,647,442 - DvMF_2891 0.29 +0.5
3,647,545 + DvMF_2891 0.35 +0.7
3,647,724 + DvMF_2891 0.44 +0.9
3,647,744 + DvMF_2891 0.45 +0.8
3,647,747 - DvMF_2891 0.45 -0.0
3,647,897 + DvMF_2891 0.53 +0.8
3,647,962 - DvMF_2891 0.57 +0.5
3,648,298 + DvMF_2891 0.75 +0.3
3,648,306 - DvMF_2891 0.75 +1.0
3,648,507 - DvMF_2891 0.86 +0.4
3,648,519 + DvMF_2891 0.86 +0.6
3,648,646 + +0.4
3,648,884 - -0.1
3,648,887 + -0.5
3,649,016 + -0.3
3,649,361 - -0.5

Or see this region's nucleotide sequence