Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2850

Experiment: MoLS4 with Chlorate 3.125 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2849 and DvMF_2850 are separated by 256 nucleotidesDvMF_2850 and DvMF_2851 are separated by 430 nucleotides DvMF_2849: DvMF_2849 - protein of unknown function DUF161 (RefSeq), at 3,601,299 to 3,602,165 _2849 DvMF_2850: DvMF_2850 - hypothetical protein (RefSeq), at 3,602,422 to 3,603,507 _2850 DvMF_2851: DvMF_2851 - diguanylate cyclase and serine/threonine protein kinase with TPR repeats (RefSeq), at 3,603,938 to 3,606,361 _2851 Position (kb) 3602 3603 3604Strain fitness (log2 ratio) -1 0 1at 3601.575 kb on + strand, within DvMF_2849at 3601.583 kb on - strand, within DvMF_2849at 3601.674 kb on - strand, within DvMF_2849at 3602.070 kb on - strand, within DvMF_2849at 3602.166 kb on + strandat 3602.174 kb on - strandat 3602.210 kb on - strandat 3602.403 kb on + strandat 3602.411 kb on - strandat 3602.815 kb on - strand, within DvMF_2850at 3602.841 kb on + strand, within DvMF_2850at 3602.841 kb on + strand, within DvMF_2850at 3602.873 kb on - strand, within DvMF_2850at 3603.132 kb on + strand, within DvMF_2850at 3603.643 kb on + strandat 3603.643 kb on + strandat 3603.651 kb on - strandat 3603.651 kb on - strandat 3603.797 kb on + strandat 3603.994 kb on + strandat 3604.002 kb on + strandat 3604.193 kb on + strand, within DvMF_2851at 3604.266 kb on + strand, within DvMF_2851at 3604.432 kb on + strand, within DvMF_2851

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with Chlorate 3.125 mM
remove
3,601,575 + DvMF_2849 0.32 -0.1
3,601,583 - DvMF_2849 0.33 -0.3
3,601,674 - DvMF_2849 0.43 -0.7
3,602,070 - DvMF_2849 0.89 -0.3
3,602,166 + -1.0
3,602,174 - -0.2
3,602,210 - -0.2
3,602,403 + -0.4
3,602,411 - +0.2
3,602,815 - DvMF_2850 0.36 -0.5
3,602,841 + DvMF_2850 0.39 -0.8
3,602,841 + DvMF_2850 0.39 -0.5
3,602,873 - DvMF_2850 0.42 -0.5
3,603,132 + DvMF_2850 0.65 -0.1
3,603,643 + -0.4
3,603,643 + -0.0
3,603,651 - -0.5
3,603,651 - -0.2
3,603,797 + -0.4
3,603,994 + -1.1
3,604,002 + -1.1
3,604,193 + DvMF_2851 0.11 -0.9
3,604,266 + DvMF_2851 0.14 -1.5
3,604,432 + DvMF_2851 0.20 -1.0

Or see this region's nucleotide sequence